genome.fa.s7661.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007661.1 Hibiscus syriacus cultivar Beakdansim tig00025625_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40010

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13--805	75	10.9	71	72	16	353	35	17	17	29	1.93
10--17567	39	462.7	39	79	8	13894	36	16	18	28	1.92
1002--1194	76	2.6	77	80	12	215	36	18	17	27	1.93
1503--1554	27	1.9	27	96	0	95	42	25	11	21	1.86
2563--2621	21	3.1	21	63	36	53	32	20	20	27	1.97
4758--27325	39	577.1	39	74	11	9185	36	17	17	28	1.92
6238--6348	32	3.3	33	76	13	102	38	16	13	31	1.87
6932--7196	136	1.9	136	84	9	353	37	17	17	26	1.92
7005--7122	61	1.9	63	84	6	161	38	18	16	26	1.92
8753--8805	27	2.0	27	92	0	88	45	24	9	20	1.81
8714--8844	66	2.0	66	89	0	199	39	20	15	24	1.91
9751--9803	27	2.0	27	96	0	97	43	24	11	20	1.85
9712--9842	66	2.0	66	90	0	208	38	20	15	25	1.91
9778--35453	117	219.8	117	71	11	8932	36	17	16	29	1.92
11707--11759	27	2.0	27	96	0	97	43	24	11	20	1.85
11668--11798	66	2.0	66	90	0	208	38	20	15	25	1.91
13624--13675	26	2.0	27	92	3	88	44	25	9	21	1.82
13585--13714	65	2.0	66	89	1	199	38	20	16	24	1.92
13546--13738	104	1.9	104	88	0	296	36	19	16	26	1.93
15036--15088	27	2.0	27	96	0	97	43	24	11	20	1.85
14997--15127	66	2.0	66	92	0	217	38	21	16	23	1.92
15258--15318	19	3.2	19	62	4	50	36	19	16	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16682--16735	27	2.0	27	92	0	90	44	20	11	24	1.83
16642--16775	66	2.0	66	88	0	196	40	17	15	26	1.89
16604--16793	105	1.8	105	88	0	290	39	16	15	28	1.89
16878--16945	20	3.5	20	62	11	50	33	14	19	32	1.92
16709--17567	194	4.4	195	81	2	965	37	16	18	28	1.92
18485--18548	23	2.8	23	90	0	101	26	26	28	18	1.98
18564--18884	103	3.1	103	96	0	579	36	23	13	26	1.92
19780--39940	194	103.3	195	75	8	13233	37	17	16	28	1.92
23619--23818	105	1.9	105	88	0	301	37	18	19	25	1.94
23878--24070	101	1.9	101	89	0	296	37	17	17	27	1.92
25791--25843	27	2.0	27	96	0	97	43	24	11	20	1.85
25752--25882	66	2.0	66	92	0	217	38	20	16	25	1.92
26439--26491	27	2.0	27	92	0	88	41	24	11	22	1.86
26400--26530	66	2.0	66	89	0	199	38	19	16	25	1.92
26635--26702	20	3.5	20	62	11	50	33	14	19	32	1.92
26661--26721	19	3.2	19	62	4	50	36	19	16	27	1.93
28243--28306	23	2.8	23	90	0	101	26	26	28	18	1.98
28322--28539	103	2.1	103	95	0	391	36	23	13	26	1.92
29432--32476	39	78.5	39	82	3	3194	37	16	17	28	1.91
32121--32322	105	1.9	105	88	0	305	36	18	19	25	1.94
32419--32544	66	1.9	66	90	0	198	39	19	17	23	1.92
32485--35453	39	77.5	39	81	5	2999	36	16	18	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33709--33774	22	3.2	21	63	20	50	30	16	16	36	1.91
34295--34347	27	2.0	27	96	0	97	43	24	11	20	1.85
34257--34386	66	2.0	65	92	1	215	37	20	16	25	1.93
35175--35374	105	1.9	105	87	0	292	37	17	18	26	1.93
35436--35488	27	2.0	27	92	0	88	45	24	9	20	1.81
35397--35527	66	2.0	66	90	0	208	38	22	14	25	1.92
35463--38248	39	72.3	39	82	4	2851	37	16	17	28	1.92
35358--35558	105	1.9	105	91	0	330	37	20	15	25	1.93
35463--39940	117	38.5	117	77	7	3367	37	16	17	28	1.92
37056--37255	105	1.9	105	85	4	278	38	18	17	26	1.92
37394--37446	27	2.0	27	92	0	88	43	24	9	22	1.83
37316--37641	105	3.0	105	77	10	287	38	17	16	27	1.92
37278--37551	144	1.9	143	90	0	431	37	18	16	28	1.92
38231--38267	19	1.9	19	88	0	56	37	16	27	18	1.92
38192--38306	58	2.0	58	87	3	169	36	18	21	23	1.95
38250--39940	39	43.6	39	83	2	1841	37	16	17	27	1.92
38153--38345	97	2.0	97	87	2	280	35	17	21	26	1.95
38075--38423	175	2.0	174	85	3	479	35	16	20	27	1.94

Tables:   1

The End!