genome.fa.s7669.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007669.1 Hibiscus syriacus cultivar Beakdansim tig00026379_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50274

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1276--1663	96	4.1	95	71	8	358	12	36	33	17	1.87
1425--1558	32	4.2	32	88	1	187	15	30	35	17	1.92
1616--1717	31	3.4	30	69	15	93	11	35	39	13	1.82
1593--1724	62	2.1	61	97	1	246	10	37	37	13	1.80
1769--1900	32	4.2	32	91	3	196	14	31	36	18	1.90
1947--2034	33	2.7	31	81	6	113	14	28	36	20	1.92
10351--10484	32	4.2	32	88	1	187	15	30	35	17	1.92
10541--10644	31	3.3	32	68	15	92	11	34	40	13	1.81
10519--10651	63	2.1	62	95	2	241	10	37	38	13	1.79
10447--10734	156	1.8	158	88	5	442	12	36	35	15	1.85
10698--10830	32	4.2	32	91	2	196	14	30	36	18	1.90
10234--10891	346	1.9	347	94	0	1176	13	35	34	17	1.89
10877--10965	33	2.8	32	82	1	115	14	28	37	20	1.92
19149--19536	95	4.1	95	72	7	374	12	36	33	17	1.88
19298--19431	32	4.2	32	88	1	187	15	30	35	17	1.92
19466--19598	62	2.1	62	95	2	241	10	37	38	13	1.79
19488--19591	31	3.3	32	68	15	92	11	34	40	13	1.81
19644--19775	32	4.2	32	92	3	205	14	31	36	18	1.90
19330--19746	156	2.7	158	80	9	512	13	34	34	17	1.89
19180--19836	345	1.9	348	94	1	1169	13	35	34	17	1.89
19822--19910	33	2.8	32	82	1	115	14	28	37	20	1.92
28105--28492	95	4.1	94	72	8	372	12	36	33	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28254--28387	32	4.2	32	88	1	187	15	30	35	17	1.92
28445--28548	31	3.3	32	68	15	92	11	34	40	13	1.81
28422--28555	62	2.1	63	97	1	252	10	37	38	13	1.79
28350--28638	157	1.8	158	88	5	451	12	36	35	15	1.85
28602--28734	32	4.2	32	91	2	196	14	30	36	18	1.90
28781--28869	33	2.8	32	82	1	115	14	28	37	20	1.92
37045--37431	94	4.1	95	71	8	365	12	36	33	17	1.88
37193--37325	32	4.2	32	88	2	187	15	30	35	18	1.92
37193--37325	65	2.1	63	87	2	185	15	30	35	18	1.92
37360--37493	63	2.1	62	97	1	250	10	37	38	13	1.79
37360--37457	31	3.1	31	66	13	92	9	37	39	13	1.76
37117--37482	190	1.9	190	85	6	510	12	34	35	17	1.87
37383--37486	31	3.3	32	68	15	92	11	34	40	13	1.81
37546--37670	32	3.9	32	91	3	189	13	29	37	19	1.90
37224--37641	157	2.7	159	80	9	514	13	34	34	17	1.88
37717--37805	33	2.8	32	82	1	115	14	28	37	20	1.92
45948--46332	95	4.1	93	71	8	341	12	36	33	17	1.88
46097--46228	31	4.2	32	86	4	178	15	31	34	18	1.92
46262--46391	63	2.1	63	97	1	244	10	36	40	13	1.79
46021--46392	188	2.0	189	84	6	488	12	35	34	16	1.87
46191--46476	156	1.8	156	88	5	436	11	37	35	15	1.85
46441--46572	32	4.2	32	92	3	205	14	31	36	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46128--46543	157	2.7	155	79	9	495	13	34	34	17	1.89
45979--46632	344	1.9	345	94	0	1168	13	35	33	17	1.89
46621--46707	33	2.6	33	82	5	104	14	26	36	21	1.93

Tables:   1

The End!