genome.fa.s7694.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007694.1 Hibiscus syriacus cultivar Beakdansim tig00109891_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79303

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1417--1452	14	2.6	14	95	4	65	52	5	8	33	1.55
8978--9051	8	7.8	9	78	16	62	74	2	4	18	1.10
8986--9056	5	14.6	5	81	11	53	76	2	4	16	1.07
9024--9050	4	6.8	4	100	0	54	77	0	0	22	0.76
12132--12157	11	2.4	11	100	0	52	0	15	0	84	0.62
12128--12267	75	1.9	76	81	4	176	13	23	8	54	1.66
18803--18843	21	2.0	21	85	0	55	19	29	9	41	1.83
21550--21574	13	1.9	13	100	0	50	72	8	12	8	1.29
22732--22799	24	2.9	24	77	12	61	72	1	5	20	1.14
22734--22848	8	13.6	8	73	13	54	73	2	5	18	1.13
22759--22848	17	5.1	17	72	22	62	75	2	5	16	1.09
22781--22852	5	15.0	5	76	13	55	76	2	2	18	1.03
22767--22848	36	2.3	34	83	6	101	76	2	4	15	1.06
22788--22870	17	4.8	17	73	17	64	75	3	6	14	1.12
22821--22869	21	2.3	21	80	13	55	79	4	4	12	1.01
22845--22877	17	1.9	17	100	0	66	75	6	12	6	1.16
26537--26575	19	2.1	18	85	4	51	30	25	10	33	1.89
31820--31875	15	3.8	15	95	2	96	12	37	0	50	1.41
36277--36316	18	2.2	18	90	0	62	32	17	15	35	1.91
36629--36982	46	7.8	46	87	3	538	20	23	13	42	1.88
36629--36982	136	2.6	137	89	3	536	20	23	13	42	1.88
36629--36982	182	1.9	182	89	3	552	20	23	13	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36631--37002	20	16.7	20	67	22	165	21	23	13	42	1.88
37201--37434	20	10.6	20	69	22	132	21	23	12	41	1.87
37196--37415	45	4.8	45	88	3	325	21	23	12	42	1.87
37219--37395	26	7.6	24	64	25	78	22	22	12	42	1.87
36762--37629	433	2.0	434	97	1	1636	29	20	10	39	1.86
42763--42798	16	2.2	16	100	0	72	22	38	16	22	1.93
42763--42805	16	2.7	16	92	0	59	20	39	16	23	1.92
43825--43943	20	5.3	20	67	24	60	21	21	11	46	1.82
43821--44186	46	8.0	46	86	1	491	22	22	10	44	1.83
43837--44151	26	13.5	25	65	22	168	21	22	10	44	1.83
63778--63838	14	4.3	14	75	4	59	29	19	29	21	1.98
63778--63838	28	2.1	29	85	8	81	29	19	29	21	1.98
64688--64726	19	2.1	19	85	0	51	30	20	10	38	1.86
68051--68095	18	2.5	18	92	0	72	40	13	26	20	1.89
70366--70390	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1

The End!