genome.fa.s7697.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007697.1 Hibiscus syriacus cultivar Beakdansim tig00109906_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  338196

Tables:   1   2   

This is table  2  of  2  ( 182 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186157--186248	43	2.1	43	94	4	159	16	38	25	20	1.93
188177--188220	14	3.4	14	70	23	51	18	11	11	59	1.61
188169--188233	24	2.7	24	97	0	121	15	12	15	56	1.67
188430--188536	37	2.9	37	87	1	142	11	14	16	57	1.64
188504--188535	14	2.3	14	94	0	55	9	15	18	56	1.66
194407--194446	21	1.9	21	89	0	62	10	25	40	25	1.86
218939--219016	23	2.9	28	76	21	94	52	3	20	23	1.63
221047--221077	2	15.5	2	100	0	62	48	0	0	51	1.00
222253--222323	31	2.3	31	82	0	88	49	7	5	38	1.54
231793--231887	30	3.2	30	75	8	104	61	4	14	20	1.50
233653--233695	3	14.0	3	85	4	59	65	2	2	30	1.18
233842--233920	40	2.0	40	87	0	113	29	20	30	20	1.97
233847--234155	43	6.8	45	69	14	145	25	18	29	25	1.98
233884--234154	141	1.9	141	91	1	445	24	18	30	26	1.98
246938--247032	30	3.2	30	75	8	104	61	4	14	20	1.50
248210--248257	22	2.2	22	88	0	69	2	20	4	72	1.11
248795--248834	3	13.0	3	84	5	53	65	2	2	30	1.19
248913--248951	17	2.3	17	100	0	78	28	15	15	41	1.87
252797--252891	28	2.9	36	73	23	116	24	16	15	43	1.87
254068--254137	32	2.2	32	100	0	140	38	34	10	17	1.83
255126--255348	75	3.0	75	98	1	432	28	26	22	22	1.99
255404--255594	3	63.3	3	98	1	373	32	0	67	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255691--255727	18	2.1	18	100	0	74	5	24	5	64	1.36
261564--261608	21	2.1	21	87	0	63	31	28	24	15	1.96
262422--262482	31	2.0	31	83	6	79	21	21	22	34	1.97
264883--264994	33	3.4	32	93	2	179	31	8	16	44	1.76
277202--277232	16	1.9	16	100	0	62	35	0	19	45	1.51
294686--294778	21	4.5	21	78	4	100	39	18	24	17	1.91
294686--294778	41	2.3	41	100	0	186	39	18	24	17	1.91
294705--294839	41	3.3	41	82	6	132	38	20	21	19	1.94
294767--294861	20	4.7	20	80	2	91	34	24	17	23	1.96
295049--295092	22	2.0	22	95	0	79	20	45	15	18	1.85
295356--295393	20	1.9	20	88	0	58	13	15	21	50	1.78
296712--296756	18	2.5	18	88	0	72	26	44	15	13	1.83
297153--297199	6	7.7	6	87	2	67	0	2	21	76	0.89
297153--297202	12	4.1	12	92	2	82	0	2	22	76	0.89
297267--297322	20	2.8	20	81	2	69	39	21	23	16	1.92
297311--297400	14	5.9	14	76	19	90	47	23	17	11	1.79
297295--297410	32	3.6	32	97	1	214	47	21	18	12	1.81
297434--297490	14	3.8	14	78	17	69	10	17	24	47	1.79
297429--297506	32	2.4	32	97	0	147	11	19	23	46	1.82
297491--297545	20	2.8	19	89	5	83	16	25	23	34	1.95
300105--300158	24	2.2	24	90	0	81	24	16	20	38	1.92
300333--300357	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302650--302741	19	5.4	19	63	24	69	44	18	20	16	1.87
302630--302743	33	3.2	37	78	14	118	42	19	21	17	1.90
302650--302761	33	3.4	33	82	4	154	42	19	23	14	1.88
302757--302799	20	2.2	20	87	4	61	16	18	23	41	1.89
302785--302818	14	2.4	14	85	0	50	8	23	20	47	1.78
302940--302976	14	2.6	14	91	0	65	45	24	0	29	1.53
304329--304398	21	3.3	21	68	5	61	20	20	37	22	1.95
304332--304454	42	2.9	41	79	7	113	22	17	36	23	1.94
306480--306578	33	3.0	33	89	1	144	39	26	23	11	1.88
306455--306620	20	9.1	19	75	16	145	42	22	22	12	1.86
306616--306663	20	2.5	19	77	12	53	10	16	27	45	1.80
307173--307225	20	2.7	21	82	11	67	26	20	28	24	1.99
307338--307391	21	2.6	21	100	0	108	29	33	16	20	1.95
310971--311021	20	2.5	20	93	0	84	47	9	21	21	1.79
315093--315140	21	2.3	21	96	0	87	27	18	12	41	1.86
319734--319782	21	2.3	21	96	0	89	26	18	12	42	1.85
322508--322566	30	2.0	30	89	0	91	22	28	20	28	1.98
337253--337293	18	2.3	18	91	0	64	0	31	21	46	1.52

Tables:   1   2

The End!