genome.fa.s7698.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007698.1 Hibiscus syriacus cultivar Beakdansim tig00109908_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  347831

Tables:   1   2   

This is table  2  of  2  ( 159 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303085--303144	23	2.6	23	89	0	93	31	18	11	38	1.87
303672--303939	20	13.6	19	78	8	159	35	23	13	26	1.93
303832--303939	19	5.7	19	91	2	164	37	22	11	29	1.89
304687--304720	12	2.8	12	90	0	50	55	29	0	14	1.40
305074--305104	3	10.3	3	92	0	53	67	0	32	0	0.91
306953--307112	64	2.5	64	83	4	189	34	20	20	25	1.96
307601--307636	17	2.0	19	89	10	58	44	5	11	38	1.63
307771--307844	31	2.4	30	82	8	87	28	18	18	33	1.95
307792--307896	30	3.5	30	82	1	93	24	18	23	33	1.97
307849--307920	29	2.4	30	86	2	92	18	19	30	31	1.95
310725--310884	64	2.5	64	83	4	189	35	19	19	26	1.95
311563--311648	30	2.8	30	83	1	91	27	18	23	30	1.98
311597--311671	30	2.5	30	84	0	96	20	20	26	33	1.97
314325--314357	15	2.2	15	100	0	66	30	6	21	42	1.77
314509--314668	64	2.5	64	83	4	189	35	19	19	26	1.95
315157--315192	17	2.0	19	89	10	58	44	5	11	38	1.63
317482--317547	20	3.3	20	84	0	87	21	15	22	40	1.90
318030--318066	18	2.1	18	89	0	56	32	5	10	51	1.60
318022--318074	24	2.2	24	86	0	70	35	3	13	47	1.61
318379--318465	39	2.2	39	93	0	156	47	20	13	18	1.83
318708--318749	20	2.1	20	90	0	66	16	19	26	38	1.92
318854--318993	66	2.2	60	86	7	181	51	17	0	30	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320369--320471	21	4.9	21	75	11	77	24	15	33	26	1.95
322417--322463	20	2.4	20	89	3	69	14	17	17	51	1.77
322726--322783	22	2.7	22	86	5	75	27	10	39	22	1.86
322911--323115	20	10.2	20	75	6	148	23	14	24	37	1.92
332634--332677	20	2.2	20	95	0	79	27	22	11	38	1.88
333591--333623	16	1.9	18	88	11	52	30	3	9	57	1.45
336989--337025	18	2.1	18	100	0	74	43	21	5	29	1.75
337343--337377	3	11.7	3	100	0	70	68	0	0	31	0.90
337614--337667	20	2.7	20	97	0	99	31	24	18	25	1.97
338225--338291	19	3.5	19	81	2	80	47	23	16	11	1.80
338309--338397	14	5.6	14	71	23	70	10	24	23	41	1.85
338292--338421	33	3.9	33	96	1	215	10	24	22	42	1.85
340486--340546	21	2.9	21	72	0	68	22	36	19	21	1.95
344794--344829	3	11.7	3	94	5	63	66	2	0	30	1.06
345063--345439	48	8.3	47	76	11	317	32	18	22	27	1.97
345087--345439	179	1.9	182	88	5	536	31	18	21	28	1.97
346797--346830	16	2.1	17	94	5	61	8	20	23	47	1.78

Tables:   1   2

The End!