genome.fa.s7709.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007709.1 Hibiscus syriacus cultivar Beakdansim tig00109924_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  657132

Tables:   1   2   3   

This is table  3  of  3  ( 285 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568132--568186	24	2.2	24	84	12	76	25	0	0	74	0.82
568132--568176	8	5.5	8	81	5	54	24	0	0	75	0.80
568444--568482	8	4.9	8	87	0	51	74	2	0	23	0.94
585140--585176	12	3.1	12	92	0	65	0	37	10	51	1.37
585619--585665	24	1.9	25	82	4	60	40	2	0	57	1.11
589454--589490	19	1.9	19	94	0	65	51	8	0	40	1.32
598250--598294	22	2.0	22	83	8	56	51	0	4	44	1.21
599812--599856	22	2.1	21	84	12	56	64	2	0	33	1.06
601108--601145	20	1.9	20	88	0	58	71	0	0	28	0.87
631696--631738	19	2.2	20	84	12	54	53	2	0	44	1.13
635202--635261	25	2.4	25	80	0	66	20	5	33	41	1.74
638272--638338	20	3.3	20	79	4	89	40	17	23	17	1.91
638262--638357	41	2.3	41	96	0	174	39	16	23	19	1.92
638282--638357	21	3.7	20	78	5	89	39	18	25	17	1.91
638284--638418	41	3.3	41	81	6	123	37	20	21	20	1.94
638346--638439	20	4.7	20	80	2	89	34	24	18	23	1.96
638992--639036	19	2.4	19	92	0	72	48	26	15	8	1.74
639032--639197	20	9.1	19	73	16	127	12	21	22	43	1.86
639085--639172	33	2.6	33	90	1	131	11	23	25	39	1.88
641189--641311	42	2.9	42	80	2	122	23	36	17	22	1.94
641245--641311	21	3.2	21	66	6	55	25	35	19	19	1.95
642668--642703	14	2.6	14	95	0	63	30	0	25	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642882--642999	19	6.7	19	68	19	85	13	22	20	43	1.87
642907--642961	14	3.6	14	73	21	56	10	23	20	45	1.82
642886--642979	33	2.8	33	100	0	188	12	23	19	44	1.85
645271--645295	12	2.1	12	100	0	50	0	28	0	72	0.86
646763--646799	14	2.6	14	86	0	56	48	21	0	29	1.50
647162--647212	20	2.5	20	93	0	84	33	23	23	19	1.97
647242--647314	14	4.5	15	74	22	60	13	20	19	46	1.83
647238--647304	18	3.8	19	83	16	92	13	22	17	46	1.83
649293--649359	19	3.5	19	81	4	80	37	22	23	16	1.94
649274--649391	20	6.4	19	74	13	86	41	23	20	14	1.89
649348--649405	14	3.9	14	79	16	71	48	25	17	8	1.75
649332--649409	32	2.4	33	95	2	140	46	24	19	10	1.81
649332--649420	32	2.8	32	89	5	126	46	25	17	10	1.80
649348--649420	14	4.5	17	75	24	70	47	27	16	8	1.74
649416--649517	20	5.6	19	70	16	63	13	21	23	41	1.89
649463--649517	20	2.8	19	83	8	65	16	23	23	36	1.94
649985--650065	36	2.3	36	97	2	155	16	14	43	25	1.86
649985--650065	18	4.6	18	82	1	101	16	14	43	25	1.86
651364--651417	20	2.8	20	80	2	65	48	22	16	12	1.80
651865--651970	20	5.3	21	79	6	89	23	16	24	34	1.95
651898--651973	39	1.9	39	86	0	107	22	17	22	38	1.93
651959--652033	21	3.6	21	78	3	89	17	25	18	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651959--652053	41	2.3	41	96	1	174	18	24	17	38	1.92

Tables:   1   2   3

The End!