Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007710.1 Hibiscus syriacus cultivar Beakdansim tig00109925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  668603

Tables:   1   2   3   

This is table  3  of  3  ( 299 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
545654--545726
29
2.5
31
81
14
86
31
0
2
65
1.06
545699--545733
12
2.8
13
91
8
63
28
0
0
71
0.86
548066--548215
24
6.2
24
99
0
291
42
20
16
21
1.90
551987--552039
16
3.4
15
77
10
61
45
1
5
47
1.37
553185--553234
19
2.5
20
80
9
57
10
28
0
62
1.27
557418--557505
43
2.1
42
82
13
112
43
1
1
54
1.15
565410--565650
45
5.3
45
89
2
331
26
20
5
47
1.72
565474--565590
22
5.2
22
65
19
71
24
22
5
47
1.71
565686--566284
68
8.8
68
88
0
849
30
23
14
31
1.94
566766--566932
58
2.9
57
84
6
212
35
20
11
32
1.88
571542--571579
17
2.2
18
85
4
51
65
0
0
34
0.93
574720--574784
25
2.5
25
87
7
85
72
1
0
26
0.94
574720--574801
8
9.9
8
73
19
62
70
2
0
26
0.99
574720--574768
9
5.4
9
79
15
57
67
2
0
30
1.02
576451--576539
18
4.9
18
91
0
142
29
33
19
17
1.95
578073--578128
20
2.5
22
78
21
64
23
23
21
32
1.98
579717--579766
12
4.0
13
89
2
68
18
46
22
14
1.84
582418--582474
29
2.0
29
93
3
98
19
5
12
63
1.47
583692--583729
20
1.9
20
94
0
67
13
2
10
73
1.19
594065--594112
21
2.2
22
81
7
62
43
0
0
56
0.99
594516--594563
3
15.3
3
81
12
53
33
4
0
62
1.14
594523--594569
22
2.1
23
84
11
62
29
6
0
63
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
603807--603883
32
2.4
32
97
2
147
45
0
2
51
1.14
607659--607755
3
31.7
3
77
8
88
40
2
0
57
1.10
608222--608263
15
2.8
15
89
7
59
76
2
21
0
0.90
608222--608263
20
2.1
20
86
8
59
76
2
21
0
0.90
608436--608466
13
2.4
13
94
0
53
0
25
64
9
1.24
609051--609093
21
2.0
21
82
8
52
23
2
4
69
1.18
609129--609175
14
3.4
14
75
19
53
40
2
0
57
1.11
609835--609877
21
2.1
20
86
4
59
34
2
2
60
1.22
620543--620584
8
5.0
8
88
11
66
83
0
16
0
0.65
620543--620584
17
2.5
17
100
0
84
83
0
16
0
0.65
621719--622357
83
7.7
83
95
1
1063
28
13
21
35
1.92
621717--622363
248
2.6
249
93
2
1104
28
13
22
35
1.92
621719--622357
331
1.9
332
91
2
1063
28
13
21
35
1.92
623100--623858
113
6.7
114
88
2
1081
37
14
19
28
1.91
623804--623882
36
2.2
36
93
0
131
50
8
20
20
1.74
623804--623858
20
3.0
20
73
21
57
50
7
21
20
1.71
624134--624214
3
26.7
3
79
7
83
40
1
0
58
1.06
624666--624707
15
2.8
15
89
7
59
76
2
21
0
0.90
624666--624707
20
2.1
20
86
8
59
76
2
21
0
0.90
624879--624909
13
2.4
13
94
0
53
0
25
64
9
1.24
625502--625544
21
2.0
21
82
8
52
23
2
4
69
1.18
625580--625609
15
2.0
15
100
0
60
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
636350--636401
20
2.6
20
87
0
77
26
23
17
32
1.96
644821--644871
15
3.3
15
81
13
50
45
0
1
52
1.12
645298--645359
31
2.0
31
87
6
90
40
12
25
20
1.89
646781--646989
5
42.2
5
98
1
404
60
0
0
39
0.97
649175--649225
19
2.7
19
82
8
61
29
17
29
23
1.97
651835--651938
24
4.5
22
79
17
106
30
22
24
23
1.99
657800--657960
64
2.5
64
78
5
171
28
16
21
33
1.95
657858--657908
19
2.7
19
82
8
61
31
15
29
23
1.95
657922--657961
21
1.9
21
100
0
80
25
15
27
32
1.95
660885--660967
26
3.3
26
75
9
75
55
4
4
34
1.42
660944--660975
16
2.0
16
93
0
55
59
0
0
40
0.97
661164--661209
20
2.3
20
96
0
83
47
0
2
50
1.13
661226--661250
12
2.1
12
100
0
50
48
0
0
52
1.00
662677--662726
2
25.5
2
95
4
93
52
0
0
48
1.00
664934--664967
18
1.9
18
88
5
52
32
11
5
50
1.63

Tables:   1   2   3

The End!