genome.fa.s7719.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007719.1 Hibiscus syriacus cultivar Beakdansim tig00109951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  308719

Tables:   1   2   

This is table  1  of  2  ( 213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--161	51	3.1	50	85	3	204	37	16	23	22	1.94
1706--2000	117	2.5	117	89	1	452	38	15	20	25	1.91
2124--2427	128	2.4	128	77	6	317	25	31	17	26	1.97
2620--2657	3	12.3	3	94	5	67	34	0	0	65	0.93
3477--3506	2	15.0	2	100	0	60	50	0	0	50	1.00
3609--3727	47	2.5	49	75	5	116	33	8	4	53	1.50
6316--6360	24	2.0	22	83	16	56	40	6	15	37	1.74
7649--7710	26	2.4	25	75	8	61	22	12	20	43	1.86
11829--11893	26	2.5	26	82	9	78	23	13	21	41	1.89
16005--16061	21	2.7	22	81	15	75	63	1	24	10	1.36
16007--16052	20	2.2	21	85	11	60	60	2	26	10	1.41
17066--17271	109	1.9	110	86	3	299	41	14	15	29	1.85
17538--17648	3	36.7	3	79	5	107	35	3	0	60	1.20
26259--26311	23	2.3	23	93	0	88	33	7	22	35	1.83
26355--26407	23	2.3	23	90	0	79	41	7	20	30	1.80
26267--26426	87	1.8	87	95	0	293	41	10	17	30	1.82
26772--26913	63	2.2	64	91	3	225	31	11	11	45	1.77
26735--27012	150	1.9	150	86	1	396	32	13	8	44	1.75
26835--27135	87	3.5	87	88	1	417	32	13	10	43	1.79
27063--27113	23	2.2	23	85	0	66	31	19	11	37	1.88
30054--30099	18	2.7	19	78	21	57	45	0	0	54	0.99
30070--30114	22	2.0	24	86	8	67	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30511--30580	32	2.2	33	86	2	106	35	5	4	54	1.44
31441--31543	37	2.8	37	87	0	143	36	5	6	50	1.53
37663--37696	16	2.0	18	88	11	54	20	11	2	64	1.39
40357--40798	54	8.2	54	84	5	547	27	17	19	35	1.94
41693--41732	21	1.9	21	84	0	53	25	25	0	50	1.50
47310--47812	54	9.4	54	81	5	527	27	17	19	35	1.94
47715--47805	47	1.9	47	93	0	155	25	15	19	39	1.91
51337--51382	18	2.5	19	96	3	85	71	6	8	13	1.29
51459--51495	16	2.4	15	86	8	56	70	2	13	13	1.28
51766--51845	24	3.4	24	80	1	72	62	17	7	12	1.52
52043--52132	14	7.1	14	66	23	56	57	18	11	12	1.63
52043--52132	24	3.7	24	83	3	99	57	18	11	12	1.63
52052--52089	20	1.9	20	84	10	51	63	18	7	10	1.50
52982--53032	22	2.4	22	81	12	61	41	0	0	58	0.98
53705--53771	35	1.9	35	87	6	100	56	2	8	31	1.45
56990--57033	20	2.2	20	88	8	63	70	0	0	29	0.88
63385--63471	43	2.0	43	91	4	140	42	18	14	24	1.88
64811--64855	19	2.4	19	89	10	67	68	0	20	11	1.19
67261--67303	19	2.3	19	88	8	61	74	0	18	6	1.04
69756--69828	36	2.0	36	84	7	94	49	6	19	24	1.72
70483--70782	59	5.2	58	89	3	399	32	5	17	44	1.72
70673--70765	29	3.2	29	66	11	82	31	9	17	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74742--75006	59	4.7	55	83	8	211	32	6	16	44	1.72
74799--75028	58	4.0	58	85	3	284	32	6	16	44	1.73
76565--76753	43	4.5	41	76	11	127	49	7	17	24	1.74
76693--76795	42	2.4	43	82	4	120	48	8	16	26	1.75
77190--77404	108	2.0	108	97	0	403	30	11	17	41	1.84
81816--81845	15	1.9	16	93	6	53	36	16	13	33	1.88
88801--88990	95	2.0	95	84	4	249	31	15	26	26	1.96
88804--89024	95	2.3	94	81	6	241	32	15	25	26	1.96
89440--89741	45	7.5	44	68	23	198	34	11	26	27	1.91
89485--89785	34	7.9	35	72	22	214	35	11	25	27	1.90
89430--89785	79	4.5	79	93	0	561	36	10	25	27	1.89
90243--90301	2	29.5	2	96	0	109	49	0	1	49	1.11
94343--94454	34	3.4	34	68	20	101	39	17	17	25	1.92
94325--94451	65	2.0	65	90	0	200	38	16	18	25	1.92
94927--95288	79	4.6	79	91	0	562	35	10	24	29	1.88
96886--96969	31	2.7	31	80	7	100	10	32	32	25	1.90
104976--105088	35	3.2	34	88	5	163	43	22	0	34	1.53
106140--106179	21	1.9	21	89	0	62	40	0	15	45	1.46
106151--106236	35	2.5	35	90	3	129	36	1	20	41	1.60
111116--111265	75	2.0	75	100	0	300	36	9	13	41	1.76
112620--112697	33	2.4	32	89	4	129	30	8	12	47	1.73
114404--114438	3	11.7	3	93	0	61	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114857--114906	3	16.7	3	100	0	100	32	0	0	68	0.90
115653--115699	3	15.7	3	82	8	60	70	0	2	27	0.99
115653--115699	19	2.4	20	85	3	69	70	0	2	27	0.99
115966--116303	134	2.5	134	84	3	446	33	19	16	30	1.94
116196--116351	47	3.3	47	69	10	120	37	17	18	26	1.93
117037--117565	228	2.3	224	80	4	573	39	20	17	22	1.92
116997--117582	45	13.0	45	78	5	511	40	19	17	22	1.91
117543--117997	38	11.8	38	87	2	597	39	17	18	24	1.92
117542--117964	191	2.2	190	88	2	616	40	17	17	24	1.91
118198--118570	185	2.0	187	98	1	732	28	12	19	39	1.89
122471--122517	3	15.7	3	82	8	60	70	0	2	27	0.99
122471--122517	19	2.4	20	85	3	69	70	0	2	27	0.99
124214--124317	29	3.7	28	76	10	86	47	10	2	39	1.53
125026--125130	37	2.8	37	85	2	131	40	15	14	29	1.86
125674--125710	2	18.5	2	100	0	74	48	0	0	51	1.00
125890--125937	22	2.2	22	84	0	60	27	4	0	68	1.07
125901--125969	22	3.1	22	77	10	70	23	2	0	73	0.96
128600--128817	103	2.1	103	91	0	346	26	13	23	36	1.92
128842--128899	23	2.5	23	85	0	71	25	20	22	31	1.98
132815--132850	13	2.8	13	100	0	72	0	36	0	63	0.94
134305--134522	103	2.1	103	92	0	355	27	13	22	37	1.91
134537--134604	23	3.0	23	80	8	68	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139698--139753	22	2.5	22	86	11	87	35	25	12	26	1.91
140147--140183	18	2.0	19	94	5	67	18	5	32	43	1.73
140695--141970	106	12.0	106	92	0	2027	33	25	18	22	1.96
142720--142824	37	2.8	37	83	0	138	40	15	13	31	1.85
143517--143633	22	4.7	25	72	18	84	28	4	0	66	1.16
143569--143632	28	2.6	24	85	14	78	21	3	0	75	0.95
143717--143772	19	2.9	19	75	19	62	23	8	1	66	1.30
144968--145017	16	2.8	18	76	14	59	46	0	0	54	1.00
144951--145082	46	2.9	45	84	8	151	40	0	0	57	1.09
145110--145171	18	3.5	17	75	14	54	46	3	1	48	1.28
147180--147205	13	2.0	13	100	0	52	15	23	23	38	1.92
163857--163968	22	5.4	22	79	12	146	54	2	0	42	1.14
163848--163971	41	3.0	41	100	0	248	55	2	0	41	1.13
163901--163971	19	3.2	24	71	21	66	52	2	0	45	1.15
164272--164363	41	2.2	41	96	0	166	40	18	15	26	1.90
168154--168236	12	6.9	12	73	10	80	46	18	16	18	1.84
168144--168236	24	3.9	24	84	2	98	48	17	16	18	1.82
168142--168233	48	1.9	48	86	4	132	48	16	16	18	1.81
168142--168248	48	2.2	48	83	6	128	47	16	16	18	1.83
168143--168248	24	4.4	24	76	9	92	47	16	16	18	1.83
172824--172916	12	7.8	12	71	9	73	48	18	15	18	1.81
172820--172930	48	2.3	48	86	6	145	47	17	16	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172823--172930	24	4.5	24	75	11	105	47	17	16	18	1.83
177501--177593	12	7.8	12	71	9	73	48	18	15	18	1.81
177497--177607	48	2.3	48	86	6	145	47	17	16	18	1.83
177500--177607	24	4.5	24	75	11	105	47	17	16	18	1.83
184006--184035	3	9.7	3	92	7	51	63	0	0	36	0.95
184003--184034	10	3.3	10	91	8	57	62	0	0	37	0.95
184322--184369	22	2.2	22	96	0	87	14	22	14	47	1.81
184358--184620	117	2.3	111	83	8	302	27	18	14	39	1.90
184581--184892	136	2.3	136	86	0	417	27	19	17	35	1.94
184984--185384	175	2.3	176	87	3	558	34	19	16	29	1.94

Tables:   1   2