genome.fa.s7719.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007719.1 Hibiscus syriacus cultivar Beakdansim tig00109951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  308719

Tables:   1   2   

This is table  2  of  2  ( 213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185439--185503	32	2.0	32	88	5	96	49	15	10	24	1.76
188014--188068	8	6.8	8	89	2	83	1	18	0	80	0.81
188002--188071	25	2.8	24	78	22	72	2	18	0	78	0.87
188008--188069	17	3.7	17	86	4	90	1	17	0	80	0.79
188513--188855	170	2.0	170	96	0	632	33	8	14	44	1.75
189175--189214	20	2.0	20	90	0	62	17	10	20	52	1.72
189225--189443	45	4.8	45	91	0	357	42	7	21	29	1.80
190259--190315	15	3.7	15	70	9	51	22	31	26	19	1.98
190261--190327	32	2.1	32	88	0	98	25	29	23	20	1.99
190366--190407	15	2.7	16	88	3	68	26	28	33	11	1.92
191609--191828	89	2.5	89	85	4	291	34	20	6	39	1.78
191609--191828	45	4.9	44	86	2	280	34	20	6	39	1.78
194383--194429	20	2.3	21	85	10	71	53	4	4	38	1.40
194499--194570	7	10.3	7	75	0	54	48	27	1	22	1.59
194505--194570	21	3.1	21	77	0	69	48	27	1	22	1.59
194499--194577	28	2.9	29	78	16	96	49	25	1	24	1.58
194505--194570	14	4.7	14	75	14	64	48	27	1	22	1.59
201667--201707	21	1.9	22	90	5	66	29	7	4	58	1.46
204088--204133	23	2.0	24	95	4	85	47	4	0	47	1.21
204154--204206	22	2.3	22	87	9	70	37	3	0	58	1.16
208948--209023	39	1.9	39	89	0	116	30	19	27	22	1.98
209018--209132	44	2.6	44	94	0	194	30	23	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215792--215899	44	2.5	44	81	3	128	33	22	25	19	1.97
217449--217486	3	12.7	3	100	0	76	34	0	31	34	1.58
217485--217529	3	15.0	3	100	0	90	33	0	0	66	0.92
217718--217761	3	14.7	3	95	0	79	63	0	34	2	1.07
219484--219615	33	4.0	33	92	4	205	22	14	23	39	1.91
224229--224327	33	3.0	33	88	4	137	22	16	22	39	1.92
227322--227351	11	2.7	11	94	0	51	20	10	3	66	1.35
227915--227991	2	41.0	2	75	12	74	51	0	0	48	1.00
228106--228195	32	2.8	32	83	1	101	8	44	14	32	1.76
230068--230144	25	3.1	25	88	0	118	22	19	28	29	1.98
230068--230153	25	3.4	24	82	3	91	23	20	27	27	1.99
231861--231913	21	2.5	21	93	0	88	22	16	26	33	1.96
236533--236603	22	3.2	22	76	4	70	36	18	2	42	1.65
236947--236993	22	2.2	22	88	7	71	12	23	31	31	1.92
237022--237061	21	1.9	21	89	0	62	20	15	30	35	1.93
238727--238873	30	4.9	30	74	10	97	40	5	0	53	1.24
240760--240805	2	24.0	2	86	8	69	47	0	2	50	1.13
240769--240813	12	3.5	13	85	11	58	44	0	4	51	1.21
245347--245413	30	2.3	30	92	2	118	34	8	11	44	1.73
245351--245399	15	3.2	16	67	21	50	32	8	12	46	1.71
245356--245410	19	3.3	19	63	36	54	32	10	10	45	1.74
245748--245795	17	2.8	17	90	0	69	47	4	2	45	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245891--245946	29	1.9	29	96	0	103	46	12	10	30	1.76
245849--246211	128	2.9	127	89	3	550	41	12	11	34	1.80
245997--246073	29	2.6	29	85	2	100	46	14	7	31	1.72
246125--246193	29	2.3	29	90	2	102	47	13	7	31	1.69
246137--246201	29	2.2	29	94	0	112	47	12	7	32	1.69
246369--246404	17	2.2	17	95	5	65	47	0	5	47	1.25
246666--246724	30	2.0	30	93	0	100	45	8	11	33	1.71
249071--249137	33	2.0	34	97	2	127	53	8	11	25	1.66
255502--255532	2	16.0	2	93	6	55	51	0	0	48	1.00
265990--266179	76	2.5	75	80	5	213	40	12	21	26	1.88
270051--270101	17	3.0	17	82	0	57	72	0	3	23	1.01
270049--270100	26	2.0	25	88	3	77	71	0	5	23	1.07
272958--273043	36	2.5	34	88	5	120	30	6	17	45	1.75
273032--273479	36	12.1	36	69	18	246	40	14	18	26	1.89
273032--273186	73	2.1	73	85	0	211	37	17	20	25	1.94
273226--273297	21	3.7	21	70	21	75	44	12	19	23	1.85
273226--273344	58	2.1	57	83	1	148	42	13	18	25	1.86
273124--273452	159	2.1	159	90	0	514	42	13	18	25	1.87
273364--273504	36	3.9	37	82	10	150	38	14	19	28	1.90
273971--274054	33	2.6	32	80	10	82	32	26	16	25	1.96
273986--274056	33	2.1	34	84	7	92	32	26	14	26	1.94
275111--275158	14	3.5	13	79	17	53	2	12	4	81	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275130--275171	13	3.3	13	76	6	50	0	14	4	80	0.86
275124--275176	25	2.0	27	89	7	83	1	13	5	79	0.99
278385--278420	17	2.1	17	90	10	56	75	0	2	22	0.94
282022--282052	2	15.5	2	100	0	62	51	0	0	48	1.00
285369--285436	22	3.2	21	70	8	66	64	10	1	23	1.32
292552--292662	19	5.6	21	76	14	69	37	23	10	27	1.88
292570--292661	19	4.7	19	79	12	89	34	23	10	30	1.89
292570--292662	39	2.3	40	77	12	102	35	23	10	30	1.89
292823--292853	16	1.9	16	93	0	53	29	3	0	67	1.06
295858--295893	18	2.0	18	94	0	63	55	22	2	19	1.56
296663--296714	24	2.2	25	79	10	63	30	1	15	51	1.54
296682--296718	18	2.1	18	89	0	56	32	5	10	51	1.60
297833--297870	20	1.9	20	94	0	67	36	23	23	15	1.94
297831--297876	20	2.3	20	80	0	65	32	21	23	21	1.98
297918--298079	20	8.1	20	78	5	184	20	17	23	38	1.93
297918--298079	40	4.1	40	90	3	220	20	17	23	38	1.93
298202--298238	14	2.6	14	100	0	74	48	21	0	29	1.50
298138--298323	71	2.5	72	88	9	254	52	17	2	27	1.57
299657--299732	21	3.6	21	81	0	89	23	19	34	22	1.97
301768--301806	20	1.9	21	89	5	62	15	10	20	53	1.70
302147--302197	22	2.3	22	89	0	84	19	13	45	21	1.85
302351--302412	20	3.1	20	90	0	106	17	8	22	51	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302351--302440	40	2.2	40	84	3	110	20	11	21	47	1.80
302432--302478	21	2.2	21	88	0	76	36	19	23	21	1.95
302513--302562	19	2.6	19	83	3	55	24	14	28	34	1.93
303521--303561	21	2.0	21	100	0	82	39	14	7	39	1.74
303713--303755	2	22.0	2	95	4	79	48	0	0	51	1.00

Tables:   1   2

The End!