genome.fa.s7726.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007726.1 Hibiscus syriacus cultivar Beakdansim tig00109973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  404270

Tables:   1   2   

This is table  2  of  2  ( 231 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230675--230981	123	2.5	122	83	5	289	39	22	5	31	1.78
233568--233605	20	1.9	20	84	10	51	55	2	7	34	1.43
234714--234776	3	21.3	3	84	12	78	33	0	0	66	0.92
234722--234776	25	2.2	25	90	3	85	34	0	0	65	0.93
234726--234792	31	2.2	31	86	0	89	43	0	0	56	0.99
236130--236167	2	19.0	2	100	0	76	50	0	0	50	1.00
237636--237667	16	2.0	16	100	0	64	0	18	0	81	0.70
238442--238481	2	20.0	2	100	0	80	50	0	0	50	1.00
239606--239670	2	32.5	2	100	0	130	49	0	0	50	1.00
239789--239830	2	21.0	2	100	0	84	50	0	0	50	1.00
239896--239942	24	1.9	25	86	4	69	31	4	4	59	1.36
242666--242844	64	2.8	65	82	4	229	28	27	16	27	1.97
242796--242844	19	2.6	19	84	9	57	24	30	18	26	1.98
248625--248746	44	2.8	43	77	6	113	28	23	20	27	1.99
251315--251506	64	3.0	64	80	8	230	28	26	16	28	1.97
260357--260397	22	1.9	21	90	5	64	75	0	21	2	0.92
261402--261682	99	2.8	99	90	2	420	32	25	20	20	1.97
262995--263041	24	1.9	25	86	4	69	31	4	4	59	1.36
269031--269083	21	2.5	21	84	0	79	18	26	18	35	1.95
269073--269124	21	2.5	21	87	3	70	38	17	23	21	1.93
269110--269247	41	3.4	41	78	6	127	32	23	18	24	1.97
269113--269227	20	5.7	20	80	2	104	29	25	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269969--270022	24	2.2	24	90	0	81	22	16	20	40	1.91
270197--270221	12	2.1	12	100	0	50	72	0	28	0	0.86
272523--272577	19	2.8	19	83	2	65	38	21	21	18	1.94
272530--272610	19	4.5	19	76	16	82	41	19	23	14	1.89
272550--272643	33	2.8	33	93	0	161	44	18	24	12	1.84
272530--272641	19	6.4	19	66	20	64	43	18	24	13	1.86
272672--272743	19	4.1	19	77	17	91	9	22	20	47	1.79
272653--272759	52	2.1	52	87	0	151	12	19	20	47	1.81
272858--272894	14	2.6	14	91	0	65	45	21	0	32	1.52
274787--274852	19	3.7	19	73	19	70	46	21	19	12	1.82
274819--274858	19	2.1	19	90	0	62	50	25	17	7	1.72
274854--274880	12	2.2	12	100	0	54	74	18	7	0	1.05
274951--275231	93	3.1	92	91	3	442	46	19	11	22	1.81
276906--276962	20	2.9	19	84	7	69	49	19	17	14	1.80
276934--277051	33	3.5	33	96	1	209	41	23	23	11	1.86
276935--277051	14	6.9	18	69	25	78	41	23	23	11	1.87
277061--277153	33	2.8	33	85	1	114	11	20	23	44	1.85
277705--277798	20	4.7	20	85	2	134	20	21	19	39	1.93
277705--277798	41	2.3	40	88	1	134	20	21	19	39	1.93
277679--277854	41	4.3	41	77	9	130	28	18	19	32	1.96
277788--277881	21	4.5	21	85	2	118	37	18	23	21	1.94
277707--277839	61	2.2	61	81	5	153	26	20	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277788--277881	41	2.3	42	86	1	127	37	18	23	21	1.94
279078--279162	44	2.0	41	86	11	118	45	1	2	50	1.22
279481--279507	2	13.5	2	100	0	54	48	0	0	51	1.00
284138--284313	88	2.0	88	96	0	325	27	24	14	33	1.94
284543--284586	21	2.1	21	95	0	79	22	4	11	61	1.48
291098--291125	2	14.0	2	100	0	56	50	0	0	50	1.00
293621--293675	17	3.2	17	73	14	51	58	3	1	36	1.26
302480--302523	18	2.4	19	84	3	54	18	6	4	70	1.27
305400--305438	19	2.1	19	85	0	51	17	5	0	76	0.96
305413--305437	13	1.9	13	100	0	50	16	4	0	80	0.87
306314--306361	22	2.2	22	84	0	60	58	6	20	14	1.58
308696--308750	23	2.4	23	100	0	110	49	12	20	18	1.79
318232--318282	24	2.1	24	96	0	93	25	15	15	43	1.86
325584--325713	66	2.0	66	89	3	199	30	4	16	48	1.67
336695--336731	18	2.0	19	89	5	58	16	5	10	67	1.38
337749--337866	21	5.6	21	89	2	175	48	18	19	13	1.81
344158--344363	34	5.9	34	83	4	243	35	21	20	21	1.96
344484--344585	42	2.5	42	79	4	118	26	24	20	28	1.99
344367--345604	214	5.8	214	93	0	2077	33	15	19	31	1.93
344367--345604	426	2.9	426	92	1	2070	33	15	19	31	1.93
354868--354931	3	23.0	3	81	15	75	32	0	1	65	1.02
354872--354929	19	3.1	19	85	9	66	32	0	1	65	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357085--357140	28	2.0	28	82	6	69	35	5	0	58	1.21
357109--357157	20	2.4	21	83	10	57	28	2	2	67	1.13
358617--358670	14	3.8	14	82	4	63	24	14	9	51	1.71
362389--362488	4	26.8	4	81	11	81	84	0	16	0	0.63
362409--362488	40	2.0	40	92	2	133	86	0	13	0	0.58
362405--362503	8	12.5	8	83	10	98	84	0	14	1	0.67
362389--362496	6	17.5	6	73	21	64	83	0	15	0	0.70
362404--362489	1	86.0	1	74	0	73	87	0	12	0	0.55
362404--362504	14	7.7	14	75	18	58	84	0	13	1	0.72
367410--367486	22	3.5	22	96	0	145	33	11	14	40	1.82
371510--371592	21	3.8	21	74	16	62	16	24	37	21	1.94
371532--371593	22	2.8	22	82	9	72	19	24	35	20	1.96
377713--378531	113	7.2	112	87	5	998	35	15	19	28	1.93
377713--378518	223	3.6	223	86	5	1077	35	15	19	28	1.93
378865--378921	3	20.0	3	85	10	75	31	0	1	66	1.02
378855--378921	23	3.0	23	82	8	84	28	0	2	68	1.04
380222--380276	3	19.0	3	75	14	53	29	3	0	67	1.08
383571--383780	22	9.3	21	70	16	102	44	3	10	41	1.57
383557--383734	91	2.0	89	88	3	266	42	3	11	42	1.59
383628--383779	69	2.2	70	81	9	177	43	4	9	42	1.57
383834--383886	19	2.6	21	77	20	58	52	1	1	43	1.23
383857--383919	26	2.4	25	84	5	81	49	0	3	47	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383829--383919	26	3.8	25	71	18	68	50	1	3	45	1.25
386099--386131	12	2.8	12	95	0	57	15	12	9	63	1.51
388307--388375	13	5.5	13	72	6	70	49	0	17	33	1.47
388302--388386	25	3.4	25	98	1	161	45	0	15	38	1.46
397041--397076	18	2.0	18	94	0	63	55	25	2	16	1.55
397478--397515	20	1.9	20	94	0	67	15	26	21	36	1.93
397561--397608	25	1.9	25	91	0	78	27	10	20	41	1.85
397976--398030	24	2.3	25	81	9	69	34	5	12	47	1.65
397995--398031	18	2.1	18	89	0	56	32	5	10	51	1.60
397987--398039	24	2.2	24	86	0	70	37	3	11	47	1.58
398343--398425	39	2.1	39	95	0	148	45	20	16	16	1.85
398604--398641	20	1.9	20	94	0	67	44	23	13	18	1.85
398650--398777	20	6.8	20	69	13	92	21	19	20	39	1.93
398707--398756	18	2.7	18	81	6	55	20	14	20	46	1.84
398836--398973	59	2.2	62	81	11	158	51	16	0	31	1.50
400029--400124	21	4.6	21	71	12	72	19	20	36	22	1.95
400049--400141	21	4.4	21	74	8	64	23	20	33	22	1.97
400640--400679	21	1.9	21	94	0	71	32	30	15	22	1.94
400705--400743	19	2.1	19	90	0	60	23	38	12	25	1.90
400640--400804	64	2.5	65	83	4	199	32	26	15	25	1.95
400815--400850	18	2.1	17	89	5	54	27	27	16	27	1.97
404159--404207	24	2.0	24	100	0	98	26	12	24	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404163--404217	24	2.4	23	87	6	76	30	16	23	29	1.96

Tables:   1   2

The End!