Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007740.1 Hibiscus syriacus cultivar Beakdansim tig00110001_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  287134

Tables:   1   2   

This is table  2  of  2  ( 144 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
254893--254941
14
3.6
13
81
8
53
26
0
2
71
0.97
254891--254946
20
2.7
21
78
15
71
26
0
1
71
0.96
255505--255564
31
1.9
31
89
0
93
40
5
10
45
1.60
256024--256091
18
3.5
19
75
18
61
58
1
1
38
1.16
256107--256155
14
3.8
14
69
20
52
57
0
0
42
0.99
256087--256151
24
2.5
24
85
12
76
55
1
0
43
1.09
256140--256200
12
5.3
12
74
18
51
65
1
0
32
1.02
257928--257958
4
7.8
4
100
0
62
77
0
0
22
0.77
258181--258215
17
2.1
16
89
5
52
80
5
0
14
0.89
258104--258312
105
2.0
105
97
0
391
72
4
6
16
1.24
259358--259396
3
12.7
3
89
5
60
69
0
0
30
0.89
259348--259396
19
2.5
19
90
3
71
69
0
0
30
0.89
259625--259809
84
2.2
84
84
0
235
24
16
25
33
1.96
259923--260052
37
3.6
36
77
8
147
42
16
19
21
1.89
259915--260070
72
2.2
72
92
1
258
41
15
19
24
1.90
259984--260165
101
1.8
100
87
4
276
37
14
19
28
1.91
260086--260165
36
2.2
37
97
2
153
35
13
21
30
1.92
260329--260667
125
2.8
115
81
9
428
24
18
25
31
1.97
261925--262168
95
2.5
96
86
3
330
31
19
18
31
1.96
264706--264761
23
2.4
22
82
8
58
76
1
12
8
1.08
266305--266417
60
1.9
60
87
7
167
30
18
15
35
1.93
266615--266752
60
2.3
59
81
3
161
34
16
16
32
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
279669--279696
8
3.5
8
100
0
56
39
0
10
50
1.37
284158--284538
55
6.9
55
87
1
514
31
14
26
27
1.95

Tables:   1   2

The End!