genome.fa.s7755.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007755.1 Hibiscus syriacus cultivar Beakdansim tig00110021_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  350557

Tables:   1   2   

This is table  1  of  2  ( 141 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1125--1187	21	2.9	21	80	4	72	20	34	25	19	1.96
1169--1208	21	1.9	21	89	0	62	25	40	25	10	1.86
3427--3470	22	2.1	22	88	12	67	36	0	38	25	1.56
7522--8524	84	12.2	80	75	7	886	29	24	20	25	1.99
7522--8511	165	6.0	164	85	1	1139	30	24	20	25	1.99
9847--10072	15	14.8	15	65	19	60	18	6	1	73	1.13
9849--9902	19	2.8	20	70	16	51	16	3	1	77	1.00
9855--10044	16	11.7	16	66	18	65	16	6	2	74	1.13
9846--10072	13	17.5	12	66	27	51	18	6	1	73	1.14
9851--9903	21	2.4	22	81	6	63	15	3	1	79	0.96
9995--10044	24	2.1	24	88	7	75	10	6	2	82	0.92
31440--31579	54	2.6	53	82	5	156	28	20	26	25	1.99
31500--31632	27	4.9	27	71	18	114	25	23	28	22	1.99
31444--31746	55	5.5	55	80	7	308	27	21	25	25	2.00
31498--31743	27	8.8	28	65	19	104	26	21	26	25	2.00
31534--31743	115	1.8	114	92	1	357	26	22	24	25	2.00
39873--39913	19	2.1	20	86	4	57	48	0	2	48	1.14
46707--46744	20	1.9	20	88	0	58	26	34	28	10	1.90
47163--47214	23	2.3	23	89	0	77	21	28	26	23	1.99
47173--47225	23	2.3	23	83	0	61	22	26	22	28	1.99
53267--53306	21	1.9	21	89	0	62	35	30	17	17	1.93
53334--53371	20	1.9	20	88	0	58	23	34	31	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53856--54069	103	2.1	103	96	0	392	24	13	24	37	1.92
54086--54137	23	2.3	23	89	0	77	21	28	26	23	1.99
54096--54148	23	2.3	23	83	0	61	22	26	22	28	1.99
58631--58659	14	2.0	15	93	6	51	48	0	0	51	1.00
59258--59299	12	3.6	12	77	6	50	73	0	4	21	1.01
59254--59302	23	2.1	23	96	0	89	73	0	8	18	1.07
59254--59309	23	2.4	23	90	0	76	73	0	8	17	1.08
61186--61244	23	2.6	23	77	0	55	38	8	18	33	1.81
61159--61320	87	1.9	86	92	1	270	40	12	13	33	1.82
61315--62037	200	3.6	199	85	3	942	30	15	14	39	1.87
64027--64067	22	1.9	22	95	5	75	48	14	7	29	1.71
64031--65198	200	5.8	200	86	2	1558	32	15	13	37	1.88
64087--65198	600	1.8	602	89	1	1730	32	15	14	37	1.88
65644--65692	19	2.6	19	90	0	71	53	8	2	36	1.43
68715--68757	22	2.0	22	90	9	70	44	4	9	41	1.57
69388--69422	18	1.9	18	94	0	61	5	34	0	60	1.21
70088--70143	24	2.4	23	80	8	69	50	7	0	42	1.30
72125--72844	182	4.0	182	88	1	969	27	16	14	42	1.86
75750--75789	9	4.3	9	87	6	53	15	30	27	27	1.96
75786--75836	5	10.8	5	79	12	63	21	52	21	3	1.62
75791--75835	23	2.0	23	95	0	81	22	51	22	4	1.66
75803--75836	9	3.7	9	88	4	50	20	55	20	2	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75784--75836	14	3.8	14	90	7	81	20	52	20	5	1.66
77727--77788	23	2.7	23	76	2	61	27	12	14	45	1.82
77746--77800	24	2.3	23	84	3	65	25	10	14	49	1.76
77794--77870	23	3.3	23	81	0	82	29	15	16	37	1.90
82022--82171	74	2.0	74	96	0	273	40	8	12	38	1.74
87623--87652	2	15.0	2	100	0	60	50	0	0	50	1.00
88940--88964	6	4.2	6	100	0	50	16	0	0	84	0.63
110726--110803	39	2.0	39	92	0	129	25	17	14	42	1.87
113798--113858	25	2.5	25	89	2	97	44	4	1	49	1.33
114421--114494	35	2.1	35	94	0	130	47	9	9	33	1.68
117421--117454	15	2.4	14	90	5	50	67	2	0	29	1.05
117421--117454	7	4.7	7	89	7	50	67	2	0	29	1.05
125432--125474	22	2.0	22	100	0	86	30	13	4	51	1.62
127478--127572	33	3.0	31	87	9	129	35	25	14	24	1.93
129524--129563	21	1.9	21	94	0	71	15	25	25	35	1.94
132214--132312	33	3.1	33	91	2	157	37	24	15	23	1.93
138655--138691	2	18.5	2	100	0	74	48	0	0	51	1.00
141879--141954	36	2.1	36	85	0	98	39	18	13	28	1.88
144122--144205	31	2.7	31	82	8	100	40	1	3	54	1.25
145341--145378	5	7.6	5	100	0	76	0	39	0	60	0.97
147556--147592	18	2.0	19	85	15	51	43	0	0	56	0.99
147537--147615	26	2.9	27	73	12	72	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147688--147750	23	2.7	23	80	5	63	46	1	1	50	1.20
147726--147778	20	2.7	20	75	16	56	49	1	0	49	1.12
147734--147883	29	5.5	28	71	25	106	50	0	0	48	1.10
147734--147837	28	3.6	29	77	16	108	52	0	0	46	1.07
147847--147883	19	1.9	19	88	0	56	51	0	0	48	1.00
147744--147892	28	5.5	28	66	26	72	52	0	0	46	1.10
148077--148149	36	2.0	36	94	5	130	52	17	15	15	1.76
167106--167136	16	2.0	16	93	6	55	51	0	0	48	1.00
167890--167925	19	1.9	19	88	5	56	58	5	13	22	1.56
170539--170613	35	2.1	35	92	0	123	53	16	2	28	1.56
175502--175535	17	2.0	17	94	0	59	55	0	23	20	1.43
177878--178218	170	2.0	170	98	0	664	38	22	10	27	1.87
183227--183296	34	2.1	32	89	5	104	21	31	15	31	1.95
183580--183621	21	2.0	21	90	0	66	26	26	21	26	1.99
183713--183757	19	2.4	19	80	0	63	40	8	6	44	1.62
189946--190626	338	2.0	338	100	0	1362	37	17	13	31	1.89
194038--194125	44	2.0	43	95	2	158	40	15	13	29	1.86
195676--195719	14	3.2	14	87	3	54	25	9	2	63	1.35
195716--195741	8	3.2	8	100	0	52	11	0	0	88	0.52
198566--198597	5	6.8	5	86	13	50	65	0	0	34	0.93
207035--207064	14	2.1	14	100	0	60	33	23	0	43	1.54
227692--227729	12	2.8	13	88	11	51	36	7	0	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231696--231779	23	3.7	23	91	0	132	19	26	27	27	1.99
231887--231941	2	27.5	2	100	0	110	50	0	0	49	1.00
234537--234574	18	2.1	19	85	5	51	47	2	13	36	1.56
238599--238633	19	1.9	17	100	0	52	48	0	0	51	1.00
246738--246763	3	8.7	3	100	0	52	30	0	0	69	0.89
255996--257209	174	7.0	174	80	3	1192	27	25	15	31	1.95
255996--257196	522	2.3	520	81	3	1320	27	25	15	31	1.95
266472--266951	174	2.8	174	89	1	712	27	25	15	31	1.96
266842--267249	141	2.9	141	81	2	489	30	26	11	31	1.92
272112--272154	21	2.0	21	82	8	52	53	2	0	44	1.13
280064--280089	8	3.2	8	100	0	52	84	0	0	15	0.62
280065--280156	17	5.1	17	68	15	51	73	0	5	20	1.02
280122--280156	4	8.5	4	87	6	52	77	0	2	20	0.90
280438--280508	33	2.2	33	82	5	81	30	7	21	40	1.79
280558--280620	8	7.8	8	74	22	60	71	0	0	28	0.86
280560--280620	25	2.5	26	84	15	85	70	0	0	29	0.88
285506--285573	35	1.9	35	82	5	84	48	22	13	16	1.80
293156--293219	23	2.8	23	82	0	83	28	25	26	20	1.99
293230--293555	103	3.2	103	99	0	643	37	24	12	25	1.91
294307--294527	64	3.5	64	83	6	234	27	19	19	33	1.96
298962--299025	23	2.8	23	87	0	92	26	23	28	21	1.99
299036--299361	103	3.2	103	99	0	643	36	24	12	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300113--300337	64	3.5	64	80	6	215	28	19	18	33	1.95
303541--303994	227	2.0	227	98	0	881	34	16	12	36	1.86
310593--311066	174	2.7	174	95	0	831	26	24	16	32	1.96
310728--311446	381	1.9	381	88	0	1098	25	25	16	32	1.96
311109--311616	174	2.9	174	86	2	689	25	25	16	32	1.96
311518--311897	140	2.7	141	79	6	405	29	26	13	30	1.94
312556--313574	510	2.0	511	99	0	1995	29	21	18	31	1.97
315280--315336	22	2.5	22	78	13	55	45	28	3	22	1.69
317770--317883	59	1.9	60	81	1	140	35	7	28	28	1.83
318774--318908	33	4.1	33	72	14	134	44	8	33	13	1.75

Tables:   1   2