genome.fa.s776.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000776.1 Hibiscus syriacus cultivar Beakdansim tig00001509_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  304350

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171111--172441	200	6.7	200	89	3	1909	32	15	12	38	1.85
171112--172441	397	3.3	399	88	3	1898	33	15	12	38	1.85
171111--172450	597	2.2	596	89	4	2013	32	15	12	39	1.85
172704--172752	19	2.6	19	93	6	82	55	8	2	34	1.41
174320--174358	18	2.2	18	90	0	60	2	38	0	58	1.12
174501--174566	20	3.0	20	70	19	60	22	39	0	37	1.55
174591--174631	21	2.0	21	95	0	73	14	31	12	41	1.83
174714--174743	15	2.0	15	93	0	51	16	60	3	20	1.50
177013--177684	183	3.7	181	88	1	945	26	16	14	41	1.88
178468--178510	6	7.3	6	89	5	52	41	18	0	39	1.51
178459--178510	12	4.5	12	80	7	63	40	15	0	44	1.46
178463--178506	23	1.9	23	85	0	61	40	15	0	43	1.47
179216--179483	43	6.3	42	78	6	182	27	20	23	29	1.99
179864--179941	21	3.6	21	78	10	86	1	41	16	41	1.57
188727--188876	41	3.7	41	72	7	144	30	24	16	28	1.97
188726--189040	81	3.9	81	87	4	388	32	23	15	29	1.95
188784--188993	41	5.2	40	74	10	219	34	22	13	29	1.93
188799--189022	41	5.5	41	73	12	192	31	22	14	31	1.94
195075--195106	2	16.0	2	93	0	55	46	0	3	50	1.17
199578--199678	44	2.3	44	100	0	202	24	17	20	36	1.94
202546--202603	24	2.5	24	77	8	66	62	0	1	36	1.06
208796--208842	21	2.1	22	84	7	60	34	2	6	57	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209781--209910	60	2.2	60	83	5	156	40	4	20	34	1.73
224438--224491	24	2.2	24	93	0	99	33	25	24	16	1.96
230598--230640	21	2.0	21	95	0	77	27	23	20	27	1.99
232584--232777	97	2.0	96	81	3	228	26	14	17	41	1.88
232843--232883	18	2.3	18	100	0	82	34	24	17	24	1.96
239403--239481	23	3.6	22	72	5	79	24	24	25	26	2.00
244996--245051	10	5.4	11	85	8	73	8	19	12	58	1.60
245002--245051	21	2.4	21	100	0	100	10	18	14	58	1.63
244996--245055	31	1.9	31	90	6	95	8	18	13	60	1.58
245328--245407	20	3.7	20	71	18	70	22	21	25	31	1.98
245348--245433	26	3.5	26	71	18	94	25	22	23	29	1.99
245324--245459	46	3.0	46	94	1	229	25	19	25	30	1.98
253064--253102	20	1.9	21	94	5	71	12	25	35	25	1.92
262213--262378	85	2.0	85	81	2	199	31	17	18	32	1.94
262358--262401	13	3.4	13	87	0	61	34	15	18	31	1.92
262785--262832	25	1.9	25	86	0	69	25	16	4	54	1.60
263202--263364	48	3.4	47	80	9	186	42	17	14	25	1.87
264113--264143	15	2.0	16	93	6	55	83	0	12	3	0.75
266248--266314	26	2.7	25	76	13	66	47	1	2	47	1.26
271471--271558	15	5.8	15	78	7	63	44	0	0	55	0.99
271476--271558	12	6.8	12	75	16	64	43	0	0	56	0.99
271473--271546	3	25.3	3	78	10	82	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271988--272044	5	11.8	5	75	17	50	78	3	17	0	0.88
271975--272027	12	4.4	12	76	9	54	81	3	15	0	0.83
271975--272029	29	2.0	27	85	7	74	81	3	14	0	0.82
271958--272041	24	3.3	24	77	12	80	73	5	20	0	1.03
272895--272947	22	2.4	21	84	9	70	32	0	3	64	1.12
272907--272992	11	7.8	11	70	22	56	32	0	3	63	1.11
272959--273004	23	2.0	24	86	4	67	32	0	2	65	1.05
272941--273025	26	3.2	25	76	19	68	36	0	3	60	1.14
273162--273388	125	1.8	124	89	2	357	39	9	9	42	1.69
289845--289882	16	2.3	16	95	4	67	26	7	28	36	1.84
299497--299543	7	6.6	7	85	4	58	80	0	10	8	0.89
299497--299552	22	2.5	22	85	2	76	78	0	12	8	0.96
300467--300698	55	4.3	55	85	4	303	29	14	27	28	1.95
300467--300930	54	8.6	54	81	11	321	30	17	25	26	1.97
300630--301004	54	6.9	54	86	4	368	31	20	24	23	1.98
301271--301304	8	4.2	8	92	0	59	58	0	2	38	1.13

Tables:   1   2

The End!