genome.fa.s7762.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007762.1 Hibiscus syriacus cultivar Beakdansim tig00110032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  314764

Tables:   1   2   

This is table  2  of  2  ( 160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226649--226744	33	2.8	33	88	3	138	43	19	21	14	1.87
226761--226862	52	1.9	53	92	2	170	14	21	17	46	1.84
226845--226933	20	4.4	20	85	2	126	17	21	24	35	1.95
226847--226933	40	2.2	40	91	4	140	18	20	24	36	1.95
229363--229417	24	2.3	24	87	3	85	41	18	18	21	1.90
230270--230482	20	10.6	20	92	3	340	18	19	24	36	1.95
230479--230524	21	2.2	21	84	7	58	39	17	26	17	1.91
230490--230537	21	2.3	21	82	10	55	37	18	22	20	1.94
231170--231216	10	4.7	10	83	0	58	57	19	21	2	1.51
231951--231985	18	1.9	18	88	0	52	20	31	31	17	1.95
246843--246902	31	1.9	31	96	0	111	41	13	16	28	1.86
251569--251611	21	2.0	21	90	0	68	25	23	23	27	2.00
252245--252322	31	2.5	31	91	0	129	41	21	17	19	1.91
252527--252555	5	6.0	5	92	8	51	41	17	0	41	1.49
256893--256966	33	2.3	33	92	2	123	25	16	29	28	1.97
262621--262679	21	2.8	20	87	10	82	47	27	5	20	1.71
274707--274798	12	7.7	12	70	4	78	19	14	11	54	1.70
274711--274799	24	3.7	24	87	4	135	20	14	11	53	1.71
274705--274798	48	2.0	48	93	4	163	19	14	11	54	1.71
278476--278541	12	5.5	12	72	0	60	21	12	12	54	1.69
278480--278541	24	2.6	24	89	0	88	20	12	11	54	1.68
284202--284264	24	2.6	24	84	0	72	42	19	15	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292209--292265	28	2.0	28	86	0	78	31	1	22	43	1.64
292723--292753	16	1.9	16	93	0	53	35	19	12	32	1.90
293883--293985	30	3.4	30	97	1	188	18	33	21	27	1.96
293938--294102	69	2.4	69	82	2	206	23	27	20	28	1.99
294288--294801	76	6.8	76	86	0	679	41	19	10	28	1.84
294552--294672	25	4.8	26	71	14	83	43	21	7	27	1.79
294749--294859	58	1.9	58	90	0	177	38	17	12	31	1.87
294674--294930	134	1.9	134	89	0	397	40	19	10	29	1.86
294802--295165	76	4.8	76	84	2	462	39	19	11	29	1.87
294516--295088	286	2.0	286	86	0	806	41	20	10	28	1.84
294450--295163	362	2.0	362	87	1	1036	41	20	10	28	1.85
296139--296363	43	5.2	42	72	10	125	28	19	21	31	1.97
296701--296809	21	5.2	21	83	2	103	1	40	17	40	1.60
305261--305300	21	1.9	21	100	0	80	37	15	15	32	1.88
306203--306297	41	2.3	43	80	10	108	30	24	15	29	1.96
306036--306238	83	2.4	83	85	0	271	25	22	19	32	1.97
310923--311174	86	3.0	85	82	4	274	24	17	24	33	1.96
310923--311174	43	5.9	43	78	4	217	24	17	24	33	1.96

Tables:   1   2

The End!