genome.fa.s7763.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007763.1 Hibiscus syriacus cultivar Beakdansim tig00110034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  397934

Tables:   1   2   

This is table  2  of  2  ( 193 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254126--254187	31	2.1	29	85	11	81	54	1	3	40	1.26
258247--258305	24	2.5	24	83	5	66	15	40	22	22	1.90
263386--263427	2	21.0	2	95	0	75	47	0	2	50	1.14
267750--267975	69	3.3	69	74	1	184	24	25	19	29	1.99
279889--279913	13	1.9	13	100	0	50	16	24	20	40	1.91
281561--281630	24	2.9	24	78	0	77	22	10	14	52	1.71
283723--283762	14	2.7	15	88	3	64	22	25	25	27	2.00
285887--285974	24	3.7	24	81	0	95	20	14	17	47	1.82
285916--285976	12	5.1	12	70	7	52	21	9	18	50	1.75
292454--292667	69	3.1	69	79	1	214	23	26	20	29	1.99
292819--293233	76	5.5	76	84	3	484	41	19	10	28	1.84
292819--293233	228	1.8	223	82	4	537	41	19	10	28	1.84
293057--293412	183	1.9	183	87	1	516	39	19	11	29	1.86
293139--293340	107	1.9	107	85	2	280	40	17	12	28	1.87
293240--293582	76	4.5	76	84	2	420	39	18	12	28	1.88
292981--293492	259	2.0	259	84	2	679	41	18	11	28	1.85
292905--293568	335	2.0	334	85	4	890	40	19	11	28	1.86
296573--296635	28	2.2	28	85	0	81	30	3	23	42	1.70
298970--299253	76	3.8	76	84	3	367	41	19	10	28	1.84
299254--299439	77	2.4	76	86	1	255	38	19	12	28	1.89
299062--299441	211	1.8	208	86	4	548	41	20	10	28	1.85
299254--299489	77	3.1	77	83	4	221	39	19	12	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300539--300846	83	3.7	83	76	4	280	34	16	16	32	1.91
301744--301832	44	2.0	44	84	4	117	21	12	25	40	1.88
306843--306913	23	3.1	23	88	6	92	63	2	2	30	1.23
306848--306891	13	3.6	13	82	17	58	65	0	2	31	1.05
308451--308479	2	14.5	2	100	0	58	51	0	0	48	1.00
309068--309156	27	3.3	26	82	4	90	22	4	28	44	1.72
310050--310078	2	14.5	2	100	0	58	51	0	0	48	1.00
310463--310645	90	2.0	90	89	0	276	33	14	14	37	1.86
310757--310846	27	3.3	26	87	6	117	24	3	26	45	1.69
314951--314993	18	2.4	18	92	3	70	62	4	16	16	1.48
317067--317101	16	2.1	17	89	5	54	40	2	37	20	1.67
322801--322840	21	1.9	21	89	0	62	27	22	15	35	1.94
324326--324395	26	2.7	26	95	0	122	72	0	11	15	1.11
327000--327162	69	2.4	69	80	0	209	23	25	20	30	1.98
327204--327318	25	4.6	24	66	17	72	40	24	9	26	1.85
327196--327455	76	3.4	76	89	2	387	41	22	10	26	1.85
327403--327513	58	1.9	58	88	0	168	39	17	11	31	1.85
327328--327573	134	1.8	134	86	1	359	40	19	10	28	1.86
327758--328108	76	4.6	76	83	0	416	41	19	10	29	1.84
329053--329278	69	3.3	69	79	3	233	24	24	20	30	1.99
335968--336006	21	1.9	20	84	5	51	38	7	7	46	1.61
336122--336169	16	2.7	18	81	15	64	75	2	2	20	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336685--336847	74	2.2	75	86	5	233	56	10	1	31	1.44
345983--346104	40	3.0	40	98	0	235	22	16	27	33	1.95
346209--346334	47	2.8	45	84	5	155	40	7	22	29	1.82
348246--348286	15	2.5	16	88	11	57	68	2	2	26	1.15
348811--348848	19	2.0	19	89	0	58	47	15	0	36	1.46
348806--348970	76	2.2	76	85	3	226	56	10	2	30	1.47
351781--351860	24	3.3	24	80	0	88	41	15	15	28	1.87
354292--354328	17	2.2	17	90	0	56	16	24	29	29	1.96
354311--355023	353	2.0	353	87	1	1034	25	19	17	37	1.93
362941--363176	69	3.4	69	77	1	258	24	26	19	29	1.99
362940--363189	138	1.8	138	82	1	322	24	26	20	28	1.99
363952--364002	20	2.6	20	87	3	68	21	15	17	45	1.86
366372--366838	43	10.8	43	86	1	551	23	24	19	32	1.97
367885--368401	76	6.8	76	85	1	624	42	19	9	28	1.83
368152--368200	25	1.9	26	91	4	82	44	24	4	26	1.71
367888--368401	228	2.3	227	85	2	692	42	19	9	28	1.82
368274--368535	134	2.0	134	84	1	346	41	18	10	29	1.84
368402--368575	76	2.3	76	86	0	240	38	19	11	30	1.87
368430--368600	76	2.2	76	85	0	216	42	20	9	28	1.83
368192--368589	210	1.9	210	85	0	553	41	19	10	28	1.83
378843--378897	23	2.4	23	84	3	67	63	9	3	23	1.40
382237--382574	85	4.0	84	75	9	258	30	20	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382297--382497	86	2.4	84	78	9	210	30	21	18	28	1.97
384944--384983	20	2.0	20	95	0	71	30	10	27	32	1.89
393602--393651	21	2.4	21	89	0	73	22	24	14	40	1.90
393823--393875	26	2.0	26	100	0	106	24	18	15	41	1.89
394685--395171	76	6.5	76	76	6	343	40	19	9	30	1.84
394685--395171	152	3.3	149	76	7	452	40	19	9	30	1.84
395512--395553	19	2.1	21	83	16	54	21	19	9	50	1.75

Tables:   1   2

The End!