genome.fa.s7765.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007765.1 Hibiscus syriacus cultivar Beakdansim tig00110037_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  517223

Tables:   1   2   

This is table  1  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14612--14668	29	2.0	29	100	0	114	26	21	10	42	1.85
14664--14987	68	4.8	68	87	1	461	32	23	14	29	1.94
15171--15321	55	2.8	54	87	7	198	33	18	12	35	1.89
17384--17825	54	8.1	54	81	6	428	30	15	17	36	1.91
24106--24139	12	2.8	12	95	0	59	29	8	20	41	1.82
26035--26063	14	2.1	14	100	0	58	51	6	6	34	1.55
31963--32193	109	2.1	111	77	12	260	45	15	16	22	1.85
32615--32671	2	30.0	2	89	10	93	49	0	0	50	1.00
33145--33238	3	31.7	3	91	2	154	63	0	3	32	1.10
33868--34278	220	1.9	219	89	3	648	35	15	16	33	1.90
34085--34648	233	2.4	233	84	5	755	33	16	18	31	1.93
34650--34795	56	2.6	56	77	14	147	38	19	12	30	1.88
34815--35168	111	3.2	111	85	5	447	41	14	9	33	1.78
34815--35167	55	6.5	55	85	5	412	41	15	9	33	1.78
35182--35282	52	1.9	54	84	11	138	36	15	12	34	1.86
42222--42457	45	5.2	45	83	5	262	23	18	14	43	1.87
46639--46700	29	2.2	28	85	8	81	59	8	16	16	1.59
48930--49169	110	2.2	110	84	5	324	48	14	14	22	1.80
59049--59079	6	5.2	6	92	0	53	16	32	3	48	1.62
61507--61622	8	13.4	8	68	18	54	76	2	14	6	1.08
61586--61622	18	2.1	18	94	0	65	86	0	10	2	0.67
61655--61699	20	2.3	20	88	3	65	4	11	20	64	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65863--65970	47	2.3	47	91	0	180	17	13	12	55	1.69
76143--76186	23	1.9	23	86	9	63	45	4	0	50	1.22
99378--99431	18	3.1	17	83	2	54	40	0	7	51	1.30
99392--99436	18	2.5	18	85	0	54	40	0	6	53	1.27
99386--99461	23	3.4	23	67	20	63	43	1	6	48	1.37
99480--99571	39	2.4	38	82	12	109	44	0	7	47	1.31
99490--99571	37	2.2	37	87	12	116	46	0	8	45	1.34
99611--99650	10	4.3	10	78	15	50	47	0	2	50	1.14
102996--103042	25	2.0	25	84	12	64	34	2	12	51	1.52
105724--106555	108	7.4	108	70	12	489	38	12	13	34	1.83
105621--106560	226	4.2	225	84	4	1135	38	12	13	34	1.83
106043--106447	118	3.5	116	74	10	373	38	12	15	34	1.85
107019--107469	229	2.0	229	88	1	672	37	18	6	37	1.77
107876--107927	21	2.5	21	96	0	95	30	15	21	32	1.94
108149--108203	19	2.8	19	84	15	60	21	23	14	40	1.90
109834--110112	21	12.9	22	67	20	96	37	8	1	51	1.44
109858--110072	40	5.5	38	71	20	142	39	7	1	50	1.42
109914--110072	2	78.5	2	69	16	78	41	7	1	49	1.39
110066--110112	23	2.0	23	84	8	60	34	12	2	51	1.52
110080--110112	8	4.2	8	92	7	59	33	12	0	54	1.37
110083--110114	15	2.1	15	100	0	64	34	12	0	53	1.39
110962--111020	25	2.4	25	100	0	118	32	3	61	3	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112532--112570	21	1.9	21	89	5	62	56	7	10	25	1.59
114214--114263	22	2.4	22	83	12	61	38	6	10	46	1.62
119793--119858	16	4.3	15	75	11	53	77	1	4	16	1.01
119709--119814	53	2.0	52	83	5	133	65	1	6	26	1.28
119793--119841	23	2.2	22	82	10	55	75	0	6	18	1.00
121021--121692	200	3.4	200	87	2	956	27	20	18	33	1.96
124616--124696	37	2.2	38	78	17	89	51	2	1	44	1.22
142585--142750	49	3.4	49	87	0	242	39	16	20	24	1.92
146234--146275	4	10.5	4	80	10	50	69	0	2	28	1.01
146243--146375	7	19.1	7	71	22	77	55	3	3	36	1.36
146246--146339	12	8.0	12	73	16	65	60	3	1	35	1.20
146356--146388	7	4.9	7	85	7	50	42	15	0	42	1.46
147065--147160	50	1.9	50	82	6	122	26	14	18	40	1.89
163030--163067	19	2.0	20	85	10	53	57	10	7	23	1.58
170164--170240	28	2.7	27	79	18	86	70	5	0	24	1.08
170232--170281	15	3.2	15	81	16	57	64	2	12	22	1.37
171432--171463	15	2.1	15	94	0	55	37	9	6	46	1.61
172008--172082	37	2.0	37	97	0	141	25	5	30	38	1.78
172832--172891	32	1.9	30	86	6	84	45	13	25	16	1.84
173928--173990	32	2.0	31	96	3	117	60	1	0	38	1.07
174571--174661	36	2.5	36	83	3	121	23	26	20	29	1.99
177983--178054	29	2.5	30	80	11	78	33	15	5	45	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180880--180933	19	2.8	19	88	0	72	35	12	0	51	1.40
185163--185222	31	1.9	31	86	0	84	30	26	8	35	1.86
185174--185238	31	2.1	31	85	0	85	24	26	12	36	1.91
187690--187767	31	2.5	30	83	8	93	37	14	23	25	1.92
192430--192476	24	2.0	23	87	4	67	29	14	10	44	1.79
192600--192639	20	2.0	20	85	0	53	35	22	10	32	1.87
200811--200872	21	2.7	23	78	11	74	32	20	19	27	1.97
206655--206732	31	2.5	30	81	6	84	41	14	20	24	1.89
211398--211444	24	2.0	23	87	4	67	29	14	10	44	1.79
238965--239130	90	1.9	89	88	6	255	34	11	7	45	1.69
246334--246382	14	3.4	15	78	15	50	71	0	2	26	0.97
246332--246382	22	2.4	19	77	22	57	72	0	1	25	0.95
248498--248544	23	2.0	25	87	8	71	38	17	4	40	1.69
250042--250100	26	2.3	26	88	8	86	40	30	8	20	1.82
252746--252794	23	2.1	23	100	0	98	46	16	12	24	1.81
258298--258344	23	2.0	23	100	0	94	21	27	17	34	1.95
267075--267140	31	2.2	29	84	10	80	36	16	3	43	1.64
269146--269211	23	2.8	24	75	9	64	71	3	3	22	1.14
271222--271608	183	2.1	183	93	2	654	46	8	3	42	1.49
274119--274163	20	2.2	21	84	4	56	33	24	13	28	1.93
274251--274289	21	1.9	21	89	5	62	41	23	10	25	1.86
275789--275888	31	2.9	34	76	13	98	48	3	20	29	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275815--276156	170	2.0	170	97	0	639	44	6	14	34	1.71
283470--283604	62	2.2	62	94	0	234	32	21	13	32	1.92
300969--301132	35	4.6	35	87	6	208	39	19	21	18	1.92
301315--301347	16	2.1	16	94	0	57	45	0	0	54	0.99
301312--301367	27	2.1	27	83	6	69	44	0	0	55	0.99
303866--303892	12	2.2	12	100	0	54	33	0	14	51	1.43
303864--303896	16	2.1	16	94	0	57	33	0	15	51	1.43
308115--308198	37	2.3	37	100	0	168	53	7	8	30	1.58
308802--309460	56	11.8	56	80	5	627	36	11	13	38	1.81
308802--309460	112	5.9	113	81	6	698	36	11	13	38	1.81
311007--311051	15	2.9	15	93	3	72	33	8	22	35	1.85
311194--311289	44	2.2	43	81	5	104	19	21	25	33	1.97
311185--311281	21	4.5	22	75	10	92	19	20	23	36	1.95
316376--316401	13	2.0	13	100	0	52	46	15	15	23	1.83
317436--317519	40	2.1	40	95	0	150	25	15	25	34	1.95
320038--320069	12	2.7	12	95	0	55	18	15	34	31	1.93
329496--329541	19	2.4	19	85	0	56	28	21	19	30	1.98
333769--333841	20	3.7	20	98	1	139	20	16	30	32	1.95
333869--333906	20	1.9	20	88	0	58	21	15	31	31	1.94
335988--336058	23	3.3	21	85	12	92	16	18	28	36	1.93
336973--337187	56	3.8	56	80	5	229	33	9	18	38	1.82
336984--337186	112	1.8	112	81	8	252	33	9	18	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337204--337712	56	9.1	56	82	3	569	37	9	13	40	1.76
337204--337712	168	3.0	168	85	4	641	37	9	13	40	1.76
337714--337858	56	2.6	56	86	3	193	40	15	11	33	1.83
341228--341343	45	2.5	44	83	4	124	31	18	12	37	1.88
341256--341437	45	4.0	44	84	4	161	29	20	11	39	1.87
341267--341447	90	2.0	90	86	6	251	28	19	12	39	1.89
341282--341447	45	3.7	45	87	3	228	28	20	12	37	1.89
341854--341922	19	3.4	19	79	13	75	31	28	11	27	1.92
347979--348021	20	2.0	22	86	8	63	25	6	20	46	1.76
360175--360215	18	2.3	18	87	8	57	9	19	51	19	1.74

Tables:   1   2