genome.fa.s7765.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007765.1 Hibiscus syriacus cultivar Beakdansim tig00110037_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  517223

Tables:   1   2   

This is table  2  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361099--361140	18	2.3	18	91	0	75	11	26	26	35	1.91
361711--361754	19	2.5	17	81	7	52	61	13	4	20	1.50
362836--362882	20	2.3	20	88	0	67	12	29	21	36	1.91
368793--368858	17	3.8	17	79	15	73	1	16	1	80	0.87
368823--368851	10	3.0	10	95	5	51	0	10	0	89	0.48
368793--368855	21	3.0	21	83	2	72	1	15	1	80	0.86
373273--373349	21	3.8	21	81	8	70	1	15	1	81	0.82
373271--373357	6	14.2	6	74	14	63	1	16	1	81	0.81
373297--373345	8	6.4	8	90	9	84	0	12	0	87	0.54
374908--374935	8	3.5	8	100	0	56	60	0	0	39	0.97
375799--375955	74	2.1	74	90	0	242	42	17	12	28	1.85
377160--377340	89	2.0	89	94	0	317	47	12	6	33	1.66
384352--384424	30	2.4	30	86	0	101	35	15	21	27	1.93
386984--387648	56	11.9	56	76	8	534	36	11	14	38	1.82
386991--387648	111	5.9	110	78	7	513	36	11	14	38	1.82
387645--387765	56	2.1	57	81	1	136	36	18	14	30	1.91
387978--388162	56	3.3	56	75	6	187	30	12	18	37	1.89
388067--388356	149	2.0	148	82	6	354	35	10	17	36	1.84
388208--388473	56	4.8	56	83	5	315	34	10	17	37	1.83
387976--388456	261	1.8	261	83	5	632	34	10	17	37	1.85
388512--388565	15	3.7	15	87	2	83	40	7	22	29	1.81
388918--389098	29	6.6	29	70	21	117	49	1	1	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389016--389094	8	10.2	8	71	20	53	48	1	1	49	1.17
389028--389103	31	2.5	32	83	16	99	51	0	1	47	1.09
389051--389097	22	2.1	23	88	4	69	53	0	0	46	1.00
389058--389114	21	2.6	22	81	10	64	52	0	0	47	1.00
389076--389167	24	3.8	23	71	22	73	47	0	2	50	1.13
388994--389106	52	2.1	52	82	12	133	50	0	0	47	1.13
389475--389714	56	4.3	56	83	4	290	37	10	14	37	1.80
389475--389721	111	2.2	112	84	5	313	38	10	14	37	1.80
389723--390031	56	5.6	56	69	19	204	38	17	10	33	1.84
392065--392110	2	23.0	2	100	0	92	50	0	0	50	1.00
398581--398644	2	32.0	2	100	0	128	50	0	0	50	1.00
410889--410996	46	2.4	46	80	13	125	27	17	20	34	1.95
417383--417422	20	2.0	21	85	5	55	25	17	10	47	1.78
418171--418203	17	1.9	17	100	0	66	36	6	33	24	1.80
419516--419675	65	2.5	65	84	5	200	27	19	23	29	1.98
419578--419813	110	2.1	110	99	0	463	27	18	20	33	1.96
419687--419835	65	2.3	64	80	12	171	26	18	22	32	1.97
425319--425372	24	2.3	24	87	3	74	53	3	1	40	1.29
425318--425372	12	4.7	11	74	12	56	52	3	1	41	1.29
425992--426074	32	2.6	32	88	3	114	19	19	22	38	1.93
437613--437641	14	2.1	14	100	0	58	79	0	0	20	0.74
441336--441370	12	2.9	12	91	0	61	14	37	25	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443071--443095	13	1.9	13	100	0	50	52	24	8	16	1.70
445205--445270	21	3.3	20	73	25	68	1	18	24	56	1.50
445197--445310	38	3.0	38	90	0	183	4	20	21	54	1.61
445760--445797	7	5.3	7	87	6	58	55	0	0	44	0.99
446906--446958	17	3.1	17	77	0	61	41	5	16	35	1.73
450616--450668	17	3.1	17	88	0	79	41	5	15	37	1.70
450616--450686	34	2.1	34	83	0	88	39	11	14	35	1.81
456820--456856	20	1.9	20	88	5	58	59	5	0	35	1.20
457104--457139	18	2.1	18	90	10	58	55	8	0	36	1.30
457184--457228	23	2.0	23	95	0	81	48	13	0	37	1.42
457183--457224	19	2.2	20	95	4	77	50	14	0	35	1.43
460550--460663	25	4.6	24	80	8	122	54	15	1	28	1.52
460550--460663	50	2.3	50	83	11	153	54	15	1	28	1.52
460550--460663	12	9.2	12	71	21	83	54	15	1	28	1.52
460550--460677	25	5.1	25	81	7	107	53	14	2	29	1.54
466313--466345	8	3.9	9	88	11	52	81	0	0	18	0.68
466314--466345	17	1.9	16	93	6	55	81	0	0	18	0.70
469356--469528	45	3.9	45	74	4	152	38	18	17	25	1.92
469535--469999	42	11.4	42	76	12	369	40	15	16	27	1.89
483518--483567	14	3.6	14	80	0	64	36	24	12	28	1.91
483568--483609	13	3.2	13	96	0	75	23	23	14	38	1.92
489002--489070	35	2.0	35	88	5	104	31	20	15	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495507--495595	3	29.7	3	91	8	146	65	0	0	34	0.93
495881--496670	113	7.0	113	97	0	1438	30	20	12	36	1.90
497468--498399	83	11.2	83	98	0	1774	34	21	14	28	1.93
499536--499607	1	72.0	1	71	0	54	0	13	0	86	0.58
499536--499616	19	4.0	21	80	16	109	0	14	0	85	0.61
499541--499615	4	19.8	4	80	16	72	0	16	0	84	0.63
511513--511572	31	1.9	32	83	10	79	20	26	15	38	1.91
511513--511575	32	1.9	32	84	9	83	22	25	15	36	1.94
512362--512426	3	21.7	3	96	0	121	64	0	1	33	1.03
512675--512719	19	2.4	19	96	0	81	55	11	17	15	1.68
516700--517069	181	2.0	181	90	4	577	45	8	2	42	1.50

Tables:   1   2

The End!