genome.fa.s7779.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007779.1 Hibiscus syriacus cultivar Beakdansim tig00110062_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  298930

Tables:   1   2   

This is table  2  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237372--237495	64	1.9	64	82	9	155	29	16	21	31	1.96
238851--238880	12	2.6	12	94	5	53	26	6	0	66	1.16
239748--239815	13	5.0	13	73	16	57	76	1	17	4	1.03
242372--242653	136	2.1	135	88	4	408	29	18	15	36	1.92
243378--243692	104	3.0	103	83	5	323	37	23	13	26	1.91
248470--248533	19	3.4	19	75	16	60	21	28	23	26	1.99
248704--248736	17	1.9	17	93	0	57	45	12	6	36	1.66
252513--252694	71	2.5	72	88	1	267	39	15	12	32	1.85
252775--252799	12	2.1	12	100	0	50	36	8	8	48	1.62
253875--254035	75	2.2	72	86	6	216	41	11	14	32	1.82
254077--254682	199	3.0	198	85	2	793	39	13	11	35	1.81
254743--255342	226	2.7	226	81	4	660	34	12	12	41	1.80
256025--256102	33	2.4	33	85	8	97	38	0	1	60	1.05
259884--259990	34	3.1	33	78	14	85	34	0	3	61	1.14
259917--259995	34	2.4	34	85	8	101	37	0	1	60	1.05
260135--260188	17	3.2	17	72	0	54	31	0	3	64	1.11
261090--261122	17	1.9	17	88	11	50	33	0	3	63	1.10
261719--261766	21	2.3	21	85	0	60	25	39	12	22	1.89
261770--261863	21	4.5	21	92	5	129	18	35	26	20	1.95
262374--262457	39	2.1	39	91	2	132	58	3	1	36	1.23
262402--262476	33	2.2	34	85	2	98	58	2	1	37	1.20
262874--263883	128	7.9	128	95	1	1832	31	20	25	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263954--263994	8	5.2	8	82	5	57	36	29	0	34	1.58
268067--268175	56	1.9	56	98	0	209	46	9	8	35	1.66
271004--271082	32	2.5	32	83	8	90	65	5	7	21	1.37
272661--272699	2	19.5	2	84	10	53	46	2	48	2	1.29
277779--277811	16	1.9	18	88	11	52	27	3	6	63	1.32
278001--278063	24	2.6	25	90	7	103	46	3	3	47	1.34
278301--278548	130	1.9	130	93	0	424	35	12	15	36	1.86
278943--279018	35	2.2	35	92	0	125	35	1	23	39	1.63
290359--290493	21	6.3	21	73	10	85	36	25	15	22	1.94
291713--291814	52	2.0	52	94	3	181	40	22	8	28	1.84
296940--296994	26	2.1	26	86	3	74	32	27	12	27	1.93

Tables:   1   2

The End!