genome.fa.s7780.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007780.1 Hibiscus syriacus cultivar Beakdansim tig00110063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  764298

Tables:   1   2   3   4   

This is table  2  of  4  ( 374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272956--273004	21	2.3	21	92	0	80	26	26	20	26	1.99
275367--275424	26	2.2	26	96	0	107	17	20	15	46	1.84
276759--276799	2	20.5	2	100	0	82	51	0	0	48	1.00
277056--277102	18	2.6	18	82	0	58	23	21	25	29	1.99
277070--277108	18	2.2	18	85	0	51	28	20	25	25	1.99
290552--290590	19	1.9	19	85	10	51	43	0	0	56	0.99
296139--296181	21	2.0	21	82	8	52	44	6	0	48	1.29
296269--296314	23	1.9	25	86	8	69	50	2	0	47	1.13
296793--296848	28	2.0	27	86	10	78	32	7	0	60	1.24
296827--296878	21	2.3	20	78	15	50	30	0	3	65	1.10
300159--300190	15	2.1	15	94	0	55	25	21	6	46	1.74
308693--308729	16	2.2	17	90	4	58	29	8	2	59	1.40
310034--310345	113	2.8	113	87	2	441	38	12	19	29	1.88
310702--310752	8	6.1	8	74	17	50	35	0	0	64	0.94
310703--310752	3	16.7	3	78	15	50	34	0	0	66	0.92
310716--310769	27	2.0	28	88	3	83	35	1	0	62	1.06
312384--312426	21	2.0	21	86	8	61	41	6	0	51	1.29
312515--312560	23	1.9	25	91	8	78	47	0	0	52	1.00
322135--322223	31	2.9	31	96	3	164	32	5	17	43	1.73
322288--322335	19	2.5	19	93	0	78	41	8	12	37	1.73
322438--322478	21	2.0	21	90	4	66	24	21	26	26	2.00
322760--322829	34	2.1	32	89	5	104	31	15	31	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328002--328041	21	1.9	21	90	10	64	57	0	2	40	1.12
332188--332243	17	3.4	17	95	2	96	19	30	37	12	1.89
332492--332712	78	2.8	78	85	1	282	43	13	19	23	1.86
333623--333680	27	2.1	27	81	6	64	25	13	15	44	1.83
334244--334293	14	3.6	14	88	0	73	26	18	28	28	1.98
347398--347621	78	2.9	78	89	2	317	38	12	22	25	1.90
359531--359583	22	2.4	22	87	6	72	35	11	35	16	1.85
361341--361413	18	4.1	18	74	0	74	31	27	19	21	1.97
365337--365461	63	2.0	63	93	3	216	33	17	12	36	1.87
366457--366835	202	1.8	205	85	8	529	40	18	14	26	1.89
371016--371053	18	2.1	18	90	0	58	50	7	2	39	1.46
373316--373348	2	16.5	2	100	0	66	48	0	0	51	1.00
373387--373411	11	2.3	11	100	0	50	40	8	8	44	1.63
373361--373590	38	6.1	37	76	10	207	43	3	7	46	1.48
373361--373584	76	2.9	73	82	10	238	43	3	7	45	1.49
373602--373642	3	13.3	3	85	14	57	29	2	0	68	1.03
373602--373646	22	2.0	22	91	8	74	28	2	0	68	1.01
374891--374995	45	2.3	45	82	6	115	10	11	2	75	1.15
375017--375073	17	3.0	19	77	15	64	24	0	1	73	0.92
375087--375146	4	15.0	4	82	6	68	23	6	0	70	1.11
375009--375130	28	4.4	28	73	18	76	23	4	1	69	1.17
375009--375146	8	17.4	8	70	15	74	23	5	1	69	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375009--375146	12	11.6	12	69	15	74	23	5	1	69	1.16
389250--389504	95	2.7	94	86	3	336	32	16	18	32	1.94
390337--391670	84	15.9	84	84	2	1534	31	24	19	24	1.98
392198--392544	37	9.4	36	78	12	316	43	4	7	44	1.51
392347--392409	27	2.4	26	86	5	99	44	1	4	49	1.33
392347--392427	29	3.0	27	82	8	76	45	2	4	46	1.37
392285--392489	102	2.0	102	85	3	279	42	4	6	46	1.49
392386--392544	38	4.2	37	79	6	158	43	3	6	45	1.48
393921--394013	27	3.3	27	76	13	82	12	9	3	74	1.19
393984--394036	23	2.3	22	81	9	61	16	5	3	73	1.17
393975--394007	17	1.9	17	100	0	66	15	6	6	72	1.24
393994--394037	23	1.9	23	90	0	70	13	6	4	75	1.17
395828--395869	19	2.3	19	84	8	52	45	2	4	47	1.36
395844--395966	63	2.0	61	85	3	165	47	0	4	47	1.29
395842--395990	30	5.0	29	79	11	142	46	0	4	48	1.25
395954--396010	20	2.8	21	81	10	64	43	0	3	52	1.18
395972--396040	21	3.1	21	76	12	59	36	1	7	55	1.37
404941--405006	30	2.2	30	86	0	87	34	21	30	13	1.92
405230--405309	24	3.3	24	98	0	151	36	16	17	30	1.92
408456--408509	25	2.0	28	86	10	78	48	14	0	37	1.45
409647--409730	44	2.0	42	83	9	107	38	20	13	28	1.90
410596--410642	6	7.7	6	83	11	60	2	17	0	80	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434924--434960	16	2.2	18	85	9	51	43	5	2	48	1.40
435435--435495	30	2.0	30	93	0	104	37	18	0	44	1.50
436846--436897	24	2.3	23	83	9	70	40	17	9	32	1.82
441010--441278	36	7.5	36	73	1	216	38	16	13	31	1.87
441081--441278	108	1.8	108	84	2	272	37	16	13	32	1.87
442102--442271	19	8.9	19	79	4	137	32	21	10	34	1.88
442107--442271	38	4.3	38	82	3	179	32	22	10	35	1.88
442102--442271	57	3.0	57	80	6	182	32	21	10	34	1.88
445891--445952	3	21.3	3	80	12	76	33	1	0	64	1.03
445929--445972	15	3.1	15	75	24	51	47	0	0	52	1.00
447547--447851	151	2.0	153	96	3	573	33	21	10	34	1.88
451223--451254	15	2.1	15	94	0	55	25	18	9	46	1.79
458642--458675	16	2.2	16	94	5	61	32	5	5	55	1.48
459686--459993	92	3.6	83	91	5	442	24	13	24	38	1.91
460316--460514	94	2.1	95	98	0	382	36	15	16	31	1.90
460954--461355	123	3.3	123	83	5	474	40	16	19	23	1.91
461508--461566	3	20.0	3	87	3	84	37	1	0	61	1.07
466925--466956	15	2.1	15	94	0	55	25	18	9	46	1.79
473650--473914	92	3.1	82	84	7	316	25	12	23	38	1.90
474241--474439	94	2.1	95	96	0	364	37	14	16	32	1.89
474750--474963	113	1.9	113	92	3	360	36	13	20	28	1.91
474869--475293	123	3.5	124	82	5	472	40	16	19	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475440--475526	3	29.0	3	86	0	120	39	1	0	59	1.05
478476--478510	15	2.2	16	90	5	54	0	11	14	74	1.08
479882--480526	54	11.9	54	85	0	835	28	15	19	36	1.93
484365--484705	54	6.3	54	89	0	504	27	16	21	34	1.95
485439--485492	24	2.2	24	87	6	74	64	0	3	31	1.11
488895--488951	21	2.7	21	91	0	96	22	8	24	43	1.81
489520--491245	4	435.5	4	97	2	3292	24	0	25	49	1.50
492472--492501	16	1.9	15	93	6	51	40	6	6	46	1.56
493515--493824	83	3.6	83	89	4	451	24	13	23	38	1.91
493515--493854	92	3.9	90	86	9	426	26	13	22	37	1.92
494151--494349	94	2.1	95	98	0	382	36	15	16	31	1.90
494660--494872	112	1.9	113	92	2	358	36	13	21	28	1.91
494795--495202	123	3.3	124	85	3	486	40	16	19	23	1.91
495350--495436	3	29.0	3	88	0	120	39	1	0	59	1.05
498379--498413	15	2.2	16	90	5	54	0	11	14	74	1.08
499783--500427	54	11.9	54	84	0	817	28	15	19	35	1.93
507021--507361	54	6.3	54	89	0	511	27	17	21	33	1.95
508095--508148	24	2.2	24	87	6	74	64	0	3	31	1.11
511549--511605	21	2.7	21	91	0	96	22	8	24	43	1.81
512174--514971	4	704.8	4	98	1	5449	24	0	25	50	1.50
515129--515199	30	2.4	30	92	0	115	23	21	16	38	1.93
515534--515598	25	2.6	25	83	7	80	41	0	20	38	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516082--516143	5	12.6	5	93	3	108	38	0	0	61	0.96
522830--522894	13	5.0	13	90	0	94	32	16	23	27	1.96
525578--525625	3	16.0	3	87	8	71	66	0	0	33	0.92
525561--525626	27	2.4	28	87	5	91	66	0	1	31	1.01
526899--527194	36	8.2	36	80	5	296	39	16	12	31	1.86
528027--528290	38	6.9	38	80	3	242	35	21	8	34	1.84
528027--528290	19	13.8	19	80	4	217	35	21	8	34	1.84
529738--529849	56	2.0	56	94	0	197	40	8	16	34	1.78
539837--539877	21	2.0	21	90	0	64	34	0	14	51	1.43
542039--542080	21	2.0	22	81	13	52	42	4	30	21	1.73

Tables:   1   2   3   4