genome.fa.s7797.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007797.1 Hibiscus syriacus cultivar Beakdansim tig00110105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  397486

Tables:   1   2   

This is table  2  of  2  ( 146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340308--340362	25	2.2	24	78	15	58	20	9	18	52	1.71
341491--341535	18	2.5	18	88	0	72	26	40	15	17	1.90
342011--342056	20	2.3	20	92	0	74	39	26	19	15	1.91
342066--342124	14	3.9	14	72	20	55	50	23	15	10	1.74
342054--342140	33	2.7	33	94	1	149	49	21	17	11	1.78
342156--342279	14	7.9	14	68	25	70	11	16	23	49	1.77
342152--342295	33	4.4	33	93	4	247	11	17	22	47	1.80
342268--342335	20	3.5	20	73	2	66	16	22	22	39	1.92
345688--345788	32	3.2	31	84	8	123	38	21	25	13	1.91
345723--345837	50	2.3	51	86	3	151	43	20	22	13	1.87
346394--346448	20	2.7	21	83	8	78	23	18	23	34	1.96
347786--348220	219	2.0	214	96	3	809	24	13	30	31	1.93
357513--357550	2	19.0	2	100	0	76	50	0	0	50	1.00
360928--360982	27	2.0	28	82	13	69	27	18	7	47	1.74
362155--362304	72	2.1	71	93	1	255	20	24	18	37	1.94
362155--362294	36	3.9	36	86	4	203	20	24	19	36	1.95
364359--364398	21	1.9	21	89	0	62	65	0	2	32	1.06
365672--365705	18	1.9	18	88	5	52	79	0	0	20	0.73
365722--365772	2	26.5	2	80	7	52	47	3	1	47	1.32
372647--372714	33	2.1	33	100	0	136	22	20	14	42	1.88
377919--377956	20	1.9	20	88	0	58	13	26	36	23	1.91
381754--381793	21	1.9	21	85	10	55	35	10	2	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385962--385991	15	2.0	15	93	0	51	13	16	0	70	1.18
385975--386019	12	3.8	12	90	0	72	15	17	0	66	1.25
385962--386042	27	2.9	28	75	20	78	17	18	0	64	1.30
388304--388617	154	2.0	154	96	0	574	33	23	10	32	1.89

Tables:   1   2

The End!