genome.fa.s7798.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007798.1 Hibiscus syriacus cultivar Beakdansim tig00110108_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  471074

Tables:   1   2   

This is table  1  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2580--2642	20	2.9	21	79	9	65	15	25	34	23	1.95
6437--6476	21	1.9	21	85	10	55	35	10	2	52	1.48
10637--10666	15	2.0	15	93	0	51	13	16	0	70	1.18
10650--10694	12	3.8	12	90	0	72	15	17	0	66	1.25
10637--10717	27	2.9	28	75	20	78	17	18	0	64	1.30
28615--28698	29	2.9	29	96	0	150	16	44	23	15	1.86
28616--28718	29	3.6	29	89	0	116	18	40	25	15	1.90
28616--28732	29	4.0	29	88	0	90	19	38	28	13	1.90
28950--29007	10	5.6	10	73	15	55	10	20	46	22	1.81
36750--36788	16	2.4	16	95	0	69	25	5	17	51	1.66
41907--41951	14	3.3	14	84	3	56	46	8	8	35	1.66
44796--44846	25	2.0	26	88	11	79	41	0	0	58	0.98
44796--44860	25	2.6	25	80	11	71	40	0	0	60	0.97
44809--44859	17	2.9	17	75	13	50	37	0	0	62	0.95
44967--45019	27	2.0	27	88	0	79	37	7	0	54	1.29
51723--51761	15	2.6	15	95	0	69	43	25	5	25	1.75
52358--52395	14	2.9	13	84	7	51	34	0	2	63	1.09
56820--56956	64	2.2	63	81	7	161	32	17	23	26	1.96
58249--58309	29	2.1	29	81	3	68	18	14	31	36	1.91
67078--67149	34	2.2	33	79	13	78	56	1	9	31	1.40
68811--69344	105	5.1	105	90	1	764	23	18	24	34	1.96
71961--72117	75	2.2	72	85	11	205	50	9	6	33	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72404--72587	100	1.8	100	84	4	255	45	11	10	32	1.75
72505--72740	76	3.1	75	80	6	260	43	11	13	32	1.79
72501--72738	77	3.1	77	81	3	266	42	11	14	31	1.81
72654--72840	100	1.9	100	86	0	266	42	10	13	33	1.79
72426--73415	253	3.9	253	79	7	987	41	11	12	34	1.79
72758--72983	77	2.9	77	84	6	273	42	10	10	36	1.73
72581--72905	177	1.8	177	87	3	485	42	10	12	33	1.78
72834--73152	170	1.9	170	83	5	421	41	12	10	35	1.77
73005--73240	76	3.1	76	80	2	258	42	13	12	31	1.81
73081--73429	177	2.0	177	83	3	443	42	12	12	33	1.80
73150--73329	100	1.8	100	83	2	245	42	13	12	32	1.81
74046--74318	108	2.5	108	82	5	293	37	11	10	40	1.76
75405--75443	6	6.5	6	85	8	53	46	0	2	51	1.14
76568--76610	15	2.8	15	82	3	50	39	6	0	53	1.28
91127--91155	2	14.5	2	100	0	58	51	0	0	48	1.00
91755--91827	23	3.1	23	73	11	76	20	10	21	46	1.81
91807--91865	23	2.5	24	79	17	79	20	16	22	40	1.91
102449--102477	11	2.6	11	100	0	58	13	27	20	37	1.91
105058--105118	31	2.0	31	86	0	86	39	6	8	45	1.60
111107--111225	24	5.2	22	73	16	66	59	14	13	12	1.61
111128--111206	23	3.4	22	75	8	68	60	15	12	11	1.58
122777--122809	17	1.9	17	93	0	57	54	6	0	39	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123177--123242	22	3.0	22	95	0	123	34	18	27	19	1.95
128659--128710	15	3.5	15	79	10	61	7	65	15	11	1.46
132436--132505	31	2.3	31	85	5	88	30	22	8	38	1.84
132449--132509	31	2.0	31	90	6	97	27	21	9	40	1.85
132686--132743	31	1.9	31	92	3	100	31	18	8	41	1.81
132744--132804	30	2.0	31	83	3	79	44	14	14	26	1.84
137818--137860	7	5.9	7	91	2	59	32	0	2	65	1.06
141302--141341	21	1.9	21	89	0	62	10	25	40	25	1.86
144311--144353	20	2.2	20	83	8	52	37	4	2	55	1.33
147301--147448	47	3.1	47	90	0	242	20	16	21	41	1.90
150541--150615	3	25.0	3	83	0	96	37	2	1	58	1.20
151940--151993	21	2.4	23	78	12	58	25	3	5	64	1.32
163413--163458	10	4.8	10	75	20	53	84	2	13	0	0.71
163416--163458	14	3.2	13	81	12	59	86	2	11	0	0.67
163412--163459	24	2.0	23	88	4	69	81	2	16	0	0.79
164821--165122	83	3.6	83	93	0	516	26	12	22	38	1.90
165077--165392	115	2.8	115	94	0	544	33	13	20	32	1.92
166086--166504	113	3.7	113	91	1	628	38	14	19	27	1.90
166445--166524	38	2.1	39	92	2	135	42	12	21	23	1.87
166333--166706	154	2.5	147	87	6	547	39	12	18	28	1.87
166601--166689	36	2.5	36	94	0	151	49	11	20	19	1.78
166640--166918	124	2.3	122	82	6	316	43	15	17	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176565--176620	18	2.9	19	85	12	71	48	8	21	21	1.77
181037--181067	15	2.1	15	100	0	62	6	6	19	67	1.35
182076--182123	20	2.4	20	96	0	87	20	25	22	31	1.98
183256--183443	40	4.7	40	75	17	151	42	23	14	19	1.89
183280--183443	20	8.1	20	77	12	167	42	25	14	18	1.88
183256--183443	60	3.1	60	89	2	279	42	23	14	19	1.89
183456--183480	13	1.9	13	100	0	50	36	24	8	32	1.84
183509--183549	20	2.0	20	90	0	64	29	14	24	31	1.95
183581--183626	20	2.3	20	84	0	65	26	15	23	34	1.94
183484--183684	77	2.6	77	94	0	339	27	14	20	37	1.92
183658--183747	20	4.4	20	80	2	117	27	14	26	31	1.95
183651--183709	20	2.9	20	77	5	64	30	11	25	32	1.92
183574--183804	118	2.0	118	92	0	381	28	13	22	35	1.93
183692--183975	77	3.7	77	88	2	365	29	15	21	33	1.94
183776--183824	20	2.5	20	89	0	80	24	16	26	32	1.96
183497--183878	195	2.0	195	93	0	647	28	14	21	35	1.93
183848--183897	20	2.5	20	83	0	64	34	12	20	34	1.89
183860--183898	20	2.0	20	94	0	69	30	10	23	35	1.88
183948--184009	21	3.0	21	87	0	88	30	12	25	30	1.93
183480--184022	272	2.0	274	85	2	745	28	15	21	34	1.94
184227--184287	30	2.0	30	100	0	122	37	0	19	42	1.52
185521--185545	12	2.1	12	100	0	50	44	16	8	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185650--185807	34	5.1	33	71	19	119	44	16	6	32	1.73
185852--186041	4	46.8	4	69	18	72	44	20	7	27	1.79
186946--186983	16	2.4	16	86	4	51	60	0	2	36	1.11
188396--188438	20	2.3	18	80	11	50	25	25	4	44	1.73
188695--188724	2	15.0	2	100	0	60	50	0	0	50	1.00
190692--190816	34	3.8	34	72	19	120	42	10	15	32	1.80
191319--191393	27	2.8	28	77	18	79	21	9	1	68	1.26
195708--195804	22	4.3	22	73	14	65	75	7	15	2	1.11
196398--196441	22	2.0	22	91	8	72	38	22	11	27	1.88
197324--197433	37	3.0	37	91	2	177	26	23	13	36	1.92
197342--197796	102	4.5	102	94	0	784	29	20	12	36	1.90
197546--197632	37	2.4	37	86	1	113	26	20	12	40	1.88
197662--197739	37	2.1	38	87	2	113	28	20	12	38	1.89
197699--197868	65	2.6	65	91	0	288	31	18	12	37	1.89
197582--197899	167	1.9	169	92	1	532	29	20	12	37	1.90
197764--197999	104	2.3	104	81	5	257	24	20	14	40	1.90
197972--198043	37	1.9	37	82	0	90	26	22	11	40	1.87
198647--199202	105	5.3	104	90	3	778	33	26	18	21	1.97
199751--199875	34	3.8	34	72	19	120	42	10	15	32	1.80
200408--200442	16	2.1	18	89	10	56	25	5	0	68	1.11
217941--218022	40	2.0	41	85	2	112	39	14	18	28	1.90
230311--230336	10	2.6	10	100	0	52	46	34	11	7	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233014--233072	25	2.4	25	97	0	109	49	10	8	32	1.67
234700--234752	26	2.0	26	100	0	106	41	15	3	39	1.65
236783--236863	30	2.7	30	80	3	92	24	11	9	54	1.66
254058--254119	31	2.0	31	84	9	81	50	4	8	37	1.54
255443--255512	23	3.0	23	76	0	77	41	14	15	28	1.86
257512--257551	2	20.0	2	100	0	80	50	0	0	50	1.00
261582--261609	2	14.0	2	100	0	56	0	50	0	50	1.00
270469--270499	13	2.3	14	94	5	55	45	0	0	54	0.99
270503--270544	22	1.9	22	85	0	57	59	4	0	35	1.19
272834--272871	17	2.2	18	90	4	60	60	0	5	34	1.19

Tables:   1   2