genome.fa.s7798.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007798.1 Hibiscus syriacus cultivar Beakdansim tig00110108_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  471074

Tables:   1   2   

This is table  2  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274555--274592	19	2.0	20	84	5	51	36	0	2	60	1.11
277644--277698	24	2.2	25	75	9	60	54	3	0	41	1.18
286111--286163	18	3.0	18	81	10	65	45	0	3	50	1.19
286700--286724	4	6.2	4	100	0	50	52	0	0	48	1.00
303331--303363	13	2.4	14	85	10	50	45	0	0	54	0.99
304167--304206	14	2.9	14	81	3	55	7	10	22	60	1.54
313791--313868	35	2.2	35	84	6	104	41	17	0	41	1.50
313864--313938	35	2.1	35	90	4	116	33	0	22	44	1.53
319872--319913	18	2.3	18	87	4	57	40	2	0	57	1.12
320890--321139	20	12.5	20	82	7	258	37	25	17	20	1.93
320909--321139	40	5.8	40	94	1	329	36	24	17	21	1.94
321822--321868	24	2.0	24	87	8	69	25	14	21	38	1.92
322043--322067	12	2.1	12	100	0	50	72	0	28	0	0.86
324398--324495	19	5.4	19	84	13	143	14	22	17	45	1.84
324379--324495	53	2.2	53	98	1	227	13	23	17	44	1.85
324554--324713	33	4.7	33	73	15	139	43	18	22	15	1.87
324624--324701	14	4.8	15	71	22	52	43	19	24	12	1.86
324554--324719	51	3.2	51	94	1	278	42	18	22	15	1.88
324726--324825	19	5.5	19	84	12	147	15	23	17	45	1.85
324709--324825	53	2.2	53	95	1	209	14	24	17	43	1.86
324931--324967	14	2.6	14	91	0	65	45	21	0	32	1.52
326944--327000	14	3.7	14	77	20	60	45	22	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326925--327017	33	2.8	33	95	0	168	47	21	20	10	1.80
326888--327022	19	7.6	19	76	16	128	45	23	19	11	1.82
327018--327146	19	7.3	19	73	17	116	8	16	28	46	1.76
327018--327109	33	2.8	33	91	3	141	7	17	28	46	1.75
327190--327475	93	3.1	93	96	1	531	46	18	12	23	1.82
328367--328480	33	3.5	33	95	0	210	44	21	24	9	1.82
328374--328480	14	6.4	18	71	25	85	43	22	24	9	1.82
328481--328552	21	3.5	21	80	3	92	11	26	18	44	1.83
328632--328702	33	2.2	33	89	0	106	47	16	23	11	1.79
328884--328938	22	2.5	22	81	0	74	20	16	40	23	1.91
329085--329278	20	9.6	20	82	5	221	19	19	25	35	1.95
329085--329278	60	3.2	60	83	0	253	19	19	25	35	1.95
329251--329367	41	2.8	41	81	1	153	23	17	21	37	1.94
329226--329362	20	6.7	20	76	9	116	19	18	22	39	1.92
329245--329402	41	3.9	40	79	5	138	20	17	24	38	1.93
354176--354222	21	2.2	21	96	0	85	25	23	12	38	1.90
356183--356402	21	10.5	21	81	4	239	40	3	3	52	1.36
356183--356402	83	2.6	83	90	0	323	40	3	3	52	1.36
356182--356402	62	3.5	63	81	3	259	39	3	3	52	1.36
358049--360055	804	2.5	806	95	2	3600	26	20	17	34	1.95
363630--363729	47	2.1	47	94	0	173	45	8	12	35	1.71
368421--370478	679	3.0	687	98	1	3969	29	15	14	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371870--371998	62	2.1	63	97	1	242	37	11	14	35	1.83
398737--398811	33	2.3	33	100	0	150	26	37	16	20	1.93
399183--399592	164	2.5	165	79	8	402	31	19	13	35	1.91
406722--406755	6	5.7	6	100	0	68	17	0	14	67	1.23
418703--418815	55	2.1	55	88	3	165	42	15	9	32	1.79
432341--432414	28	2.6	29	82	6	73	43	1	4	51	1.29
432357--432414	28	2.1	28	87	6	82	43	1	1	53	1.21
442892--443156	129	2.0	132	90	2	419	34	13	17	34	1.89
447706--447738	2	16.5	2	93	0	57	51	3	0	45	1.16
455999--456031	11	2.8	12	90	9	50	18	27	18	36	1.94
455999--456031	6	5.5	6	86	13	50	18	27	18	36	1.94
458463--458500	20	1.9	20	94	0	67	44	0	2	52	1.14
458921--458956	14	2.5	15	95	4	65	47	0	0	52	1.00
459859--459909	2	26.0	2	96	4	95	49	0	0	50	1.00
461708--461831	20	5.7	20	73	19	104	21	25	8	43	1.82
461694--461857	46	3.6	46	95	1	285	23	23	9	44	1.81
462344--462393	20	2.5	19	84	15	66	72	0	6	22	1.07
462418--462690	37	7.4	36	71	13	153	41	12	6	40	1.68
462427--462643	74	2.9	70	75	16	190	41	11	5	41	1.66
466526--466596	9	7.6	9	77	14	72	18	26	25	29	1.98
466526--466596	18	3.7	19	92	5	117	18	26	25	29	1.98
466600--466638	17	2.3	17	100	0	78	17	46	23	12	1.83

Tables:   1   2

The End!