genome.fa.s7803.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007803.1 Hibiscus syriacus cultivar Beakdansim tig00110121_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  468357

Tables:   1   2   

This is table  2  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372173--372217	13	3.5	13	84	3	65	15	17	44	22	1.86
373975--374057	23	3.5	23	72	20	73	48	0	0	51	1.00
373979--374130	26	5.7	26	66	19	82	49	0	1	48	1.14
374105--374145	15	2.8	15	88	3	57	39	2	0	58	1.11
374115--374163	8	6.1	8	76	9	55	38	2	0	59	1.09
374137--374170	17	2.0	17	94	0	59	38	5	0	55	1.24
374323--374408	40	2.3	39	84	8	106	45	2	2	50	1.27
374448--374505	29	2.2	25	82	17	64	50	1	3	44	1.29
375584--375718	70	1.9	70	92	1	227	54	7	11	26	1.63
379466--379500	16	2.1	17	94	5	63	68	2	0	28	1.04
380182--380217	6	5.8	6	87	6	54	44	0	0	55	0.99
380178--380217	13	3.2	13	89	7	64	42	0	0	57	0.98
380226--380278	23	2.3	23	83	6	63	54	3	0	41	1.18
385144--385208	23	3.0	23	72	27	61	47	1	0	50	1.10
389515--389553	20	2.0	20	89	0	60	28	28	17	25	1.98
391449--391485	19	2.1	18	90	10	58	13	27	5	54	1.61
394334--394394	27	2.2	27	97	2	113	44	8	14	32	1.75
394385--394870	263	1.8	263	89	0	767	39	15	11	33	1.83
394385--394870	131	3.7	131	88	1	731	39	15	11	33	1.83
397933--398055	42	3.0	40	77	7	104	31	21	19	27	1.97
397661--398311	255	2.5	255	87	2	896	34	16	15	33	1.91
405674--406196	131	4.0	131	87	0	733	41	16	9	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405674--406196	261	2.0	262	88	0	787	41	16	9	31	1.82
406376--406428	21	2.5	21	84	0	70	20	26	18	33	1.96
406422--406460	20	2.0	20	94	0	69	38	12	20	28	1.89
407320--407373	24	2.2	24	90	0	81	22	16	20	40	1.91
409418--409511	20	4.7	20	89	2	145	34	24	22	19	1.97
409483--409616	33	3.8	33	83	8	151	44	19	22	14	1.86
409516--409622	19	5.8	19	81	12	143	46	17	20	14	1.83
409631--409726	33	2.8	33	87	3	129	13	22	20	42	1.87
411245--411282	18	2.1	19	90	5	60	26	13	34	26	1.93
411769--411840	20	3.6	20	94	0	126	38	20	20	19	1.93
411911--412020	20	5.5	20	94	0	157	21	20	22	35	1.96
413891--413940	20	2.5	20	93	0	82	50	24	14	12	1.76
414004--414052	20	2.5	20	79	0	62	22	20	22	34	1.97
414682--414727	21	2.2	21	84	0	56	36	15	28	19	1.92
415316--415364	24	2.1	23	84	3	62	67	12	6	14	1.40
423296--423339	20	2.1	21	83	8	54	15	0	18	65	1.27
423854--423908	21	2.5	24	80	19	66	29	32	0	38	1.58
424960--424991	16	2.0	16	93	0	55	81	3	9	6	0.97
426400--426452	2	27.0	2	82	17	67	47	0	3	49	1.19
426401--426452	13	4.0	13	82	9	70	48	0	3	48	1.20
426567--426606	20	2.0	21	85	5	55	55	0	0	45	0.99
434340--434371	6	5.2	6	92	7	55	18	15	15	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434340--434371	13	2.6	12	90	9	55	18	15	15	50	1.79
436905--436946	18	2.4	17	84	7	57	83	4	11	0	0.79
436923--436983	8	7.9	8	78	14	58	78	1	19	0	0.83
436915--436998	23	3.5	23	80	11	98	79	1	19	0	0.79
436915--436992	41	1.9	41	87	10	115	79	1	19	0	0.80
436917--437009	23	4.1	22	77	16	93	78	1	20	0	0.81
436915--437010	40	2.3	41	79	13	108	79	1	19	0	0.80
437647--437709	28	2.2	28	88	0	90	36	34	7	20	1.82
439451--439511	20	3.0	19	75	15	68	19	32	24	22	1.97
439097--439783	132	5.2	132	92	1	1083	25	21	21	31	1.98
441711--441779	30	2.4	29	86	9	81	26	7	11	55	1.61
441726--441783	30	1.9	30	100	0	116	24	8	12	55	1.64
443852--443897	22	2.1	22	84	8	58	15	2	6	76	1.09
445478--445524	3	16.0	3	82	4	60	31	4	2	61	1.27
446689--446735	20	2.4	19	80	16	51	25	2	14	57	1.49
449185--449246	32	1.9	32	90	0	97	16	14	12	56	1.68
453381--453685	103	2.9	102	83	6	373	33	16	10	39	1.83
453858--453943	29	2.8	31	82	10	97	26	11	9	52	1.68
453981--454042	30	2.1	30	93	3	108	33	12	14	38	1.84
453921--454097	91	1.9	93	89	5	277	27	14	14	43	1.84
453997--454121	66	1.9	66	86	6	182	26	14	12	46	1.80
454075--454196	28	4.6	26	71	25	87	32	13	10	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454186--454401	118	1.8	118	85	4	301	31	14	12	40	1.84
454484--454550	31	2.2	30	84	10	82	28	13	13	44	1.81
454547--454605	15	3.9	15	95	0	100	30	20	5	44	1.73
454909--455086	66	2.7	65	75	10	166	25	20	15	38	1.91
455410--455508	40	2.4	40	76	8	101	26	35	15	23	1.94
455683--455729	3	16.0	3	82	4	60	31	4	2	61	1.27
456889--456935	20	2.4	19	80	16	51	25	2	14	57	1.49
457322--457349	8	3.5	8	100	0	56	21	0	14	64	1.29
459693--459733	10	4.1	10	83	0	55	58	19	12	9	1.61
459696--459733	20	1.9	20	94	0	67	57	21	13	7	1.60
466032--466079	20	2.4	20	85	0	60	0	54	33	12	1.38

Tables:   1   2

The End!