genome.fa.s7806.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007806.1 Hibiscus syriacus cultivar Beakdansim tig00110125_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  416740

Tables:   1   2   

This is table  2  of  2  ( 204 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274860--274918	17	3.4	17	76	21	68	59	5	16	18	1.55
274850--274918	35	2.0	35	91	0	111	53	5	18	21	1.65
282800--282840	3	13.3	3	89	5	64	68	0	0	31	0.90
282993--284214	134	9.1	134	82	2	1328	28	16	24	31	1.96
290187--290384	99	2.0	99	100	0	396	34	15	11	39	1.82
290666--290736	28	2.6	26	78	12	79	60	7	5	26	1.45
292203--292255	3	17.3	3	84	3	70	67	0	0	32	0.91
296334--296721	141	2.8	138	82	6	440	31	14	17	36	1.90
299355--299396	21	2.0	21	95	0	75	23	26	28	21	1.99
300819--300859	3	14.0	3	87	5	57	68	2	29	0	1.03
302510--302549	21	2.0	21	90	5	64	30	12	7	50	1.68
302782--302831	20	2.5	20	84	12	75	40	6	18	36	1.75
302863--302906	21	2.2	20	87	4	61	27	22	25	25	2.00
304848--304951	33	3.0	36	79	11	117	32	14	8	44	1.76
304848--304952	36	3.0	35	80	8	108	32	14	8	44	1.75
305469--305548	37	2.1	39	88	4	119	30	11	23	35	1.90
306533--306592	5	11.8	5	79	10	68	75	1	5	18	1.07
307364--307454	32	2.8	32	90	5	139	52	3	16	27	1.59
307629--307677	21	2.3	21	100	0	98	28	24	28	18	1.98
317663--317734	3	24.3	3	94	2	128	34	0	1	63	1.03
318567--318632	30	2.2	30	94	0	114	30	16	24	28	1.97
321816--321881	26	2.4	27	77	5	71	21	15	7	56	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321873--321919	14	3.5	14	80	11	62	19	12	2	65	1.35
321897--321927	14	2.2	14	94	0	53	16	19	6	58	1.59
325907--327221	123	10.7	123	88	2	1795	39	15	19	26	1.91
325907--327221	370	3.6	367	87	2	1879	39	15	19	26	1.91
329257--329450	61	3.2	60	73	8	194	26	12	25	35	1.92
329174--329446	122	2.2	122	89	1	424	27	13	23	35	1.92
329486--329676	83	2.3	83	82	1	213	22	16	26	34	1.95
329899--330137	103	2.3	101	80	3	244	35	10	16	38	1.83
330075--330188	58	2.0	58	84	3	149	35	14	18	30	1.91
333655--333704	15	3.4	15	78	15	68	16	20	0	64	1.30
333652--333719	29	2.3	29	100	0	136	17	20	0	61	1.34
333898--333932	16	2.1	16	89	5	52	77	0	20	2	0.90
334036--334104	29	2.4	29	100	0	138	21	7	28	42	1.80
338236--338279	21	2.1	21	83	8	54	18	13	0	68	1.22
339524--339594	35	2.0	36	89	10	112	1	16	2	78	0.94
343929--343970	16	2.6	17	82	14	54	64	4	2	28	1.26
343937--343970	15	2.3	15	90	10	52	61	5	2	29	1.34
344095--344185	32	2.8	32	85	5	112	53	2	17	26	1.55
347356--347432	24	3.2	24	61	14	59	44	11	9	35	1.73
347353--347457	48	2.2	48	96	0	201	45	15	7	31	1.74
347350--347430	25	3.3	25	61	15	60	43	12	8	35	1.73
355428--355467	21	1.9	21	89	0	62	25	40	25	10	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357400--357433	17	2.0	17	88	0	50	17	2	26	52	1.58
358894--358939	17	2.7	17	100	0	92	67	0	0	32	0.91
361792--361944	76	2.0	76	96	0	279	45	8	15	30	1.76
363339--363384	18	2.6	18	89	0	74	19	50	19	10	1.77
365703--365807	23	4.5	24	91	2	169	23	19	20	36	1.95
367972--368020	13	3.5	13	80	20	62	16	46	24	12	1.81
367950--368026	18	4.2	18	91	8	120	16	48	22	12	1.80
367977--368050	8	9.5	8	77	16	68	14	39	27	18	1.90
368010--368041	7	4.4	7	96	4	55	12	34	28	25	1.92
367950--368026	35	2.1	35	90	9	118	16	48	22	12	1.80
370347--370428	24	3.5	24	86	3	121	25	18	20	35	1.95
372040--372163	60	2.1	59	86	3	169	44	8	8	38	1.65
373854--373961	36	3.0	36	83	2	119	33	14	7	44	1.73
374476--374550	37	2.0	38	84	2	98	25	9	26	38	1.86
378685--379855	134	8.4	135	81	8	1164	21	19	23	35	1.96
378939--378970	16	2.0	16	93	0	55	18	15	43	21	1.87
378695--379866	286	4.2	283	78	13	1204	21	18	23	35	1.96
378955--379866	275	3.3	268	84	6	1084	22	18	23	35	1.96
378955--379852	137	6.6	137	84	5	1023	21	18	23	35	1.95
380406--380448	21	2.0	21	86	0	59	37	27	9	25	1.87
381367--381417	21	2.4	21	76	0	57	25	25	29	19	1.99
381411--381497	42	2.1	41	82	2	102	21	19	33	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382050--382085	17	2.1	17	90	10	56	50	5	2	41	1.40
383185--383214	16	1.9	16	93	6	53	63	10	0	26	1.26
383187--383250	29	2.2	29	83	5	85	59	3	0	37	1.13
383206--383249	19	2.2	19	84	8	52	59	0	0	40	0.98
392395--392449	13	4.2	13	83	0	74	34	14	21	29	1.93
392395--392449	26	2.1	26	89	0	83	34	14	21	29	1.93
397500--397542	21	2.1	20	82	4	50	25	9	6	58	1.54
400345--400374	15	2.0	15	93	0	51	50	0	0	50	1.00
400418--400503	42	2.0	42	86	0	118	26	18	24	30	1.98
402114--402219	36	2.9	36	82	8	117	33	16	5	43	1.72
402734--402808	37	2.0	38	86	2	107	25	10	26	37	1.89
403017--403066	3	17.0	3	91	4	84	30	0	0	70	0.88
403995--404025	16	1.9	16	100	0	62	58	22	12	6	1.58
404087--404153	16	4.3	16	81	3	84	56	17	11	13	1.66
404095--404155	32	1.9	32	89	0	95	52	21	14	11	1.73
405225--405272	10	4.4	10	78	19	51	54	25	12	8	1.65
405232--405287	14	4.3	14	80	17	75	51	25	14	8	1.70
405225--405280	24	2.3	24	100	0	112	55	23	12	8	1.65

Tables:   1   2

The End!