genome.fa.s7818.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007818.1 Hibiscus syriacus cultivar Beakdansim tig00110154_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  290479

Tables:   1   2   

This is table  1  of  2  ( 151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8768--8814	14	3.2	14	77	17	51	74	0	12	12	1.07
9930--10705	84	9.2	84	97	0	1464	27	14	21	36	1.92
11410--12072	113	5.9	113	95	1	1149	37	12	20	29	1.89
12386--12459	3	24.7	3	94	0	130	33	0	2	63	1.09
12920--12976	22	2.7	21	72	5	60	70	7	22	0	1.11
18506--18554	22	2.2	23	82	10	57	30	4	2	63	1.24
18531--18566	14	2.6	14	86	0	54	33	2	0	63	1.08
22780--23719	105	8.9	105	93	0	1333	34	24	18	22	1.96
25915--25963	22	2.2	23	82	10	57	30	4	2	63	1.24
25940--25975	14	2.6	14	86	0	54	33	2	0	63	1.08
26899--26952	2	27.0	2	100	0	108	50	0	0	50	1.00
27480--27539	23	2.6	23	78	17	70	70	0	5	25	1.08
27483--27542	24	2.4	26	75	13	63	70	0	5	25	1.08
27743--27868	50	2.5	50	78	5	137	18	34	27	19	1.95
28147--28479	111	3.0	111	96	0	594	36	7	10	45	1.67
29988--30041	18	3.0	18	97	0	99	29	27	20	22	1.98
30637--30723	35	2.5	34	78	12	88	25	6	10	57	1.57
34604--34956	187	1.9	187	94	4	628	41	2	9	46	1.51
35234--35261	3	9.3	3	100	0	56	64	0	0	35	0.94
40618--40651	12	2.9	12	91	4	52	38	2	0	58	1.13
41004--41056	19	2.8	19	97	0	97	20	28	16	33	1.95
41075--41187	21	5.0	21	67	17	66	20	17	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41095--41163	20	3.4	20	76	4	75	18	18	23	39	1.93
41095--41184	41	2.2	41	95	0	162	21	17	24	36	1.94
41114--41225	21	5.3	22	69	8	63	22	16	25	35	1.95
41828--41863	6	6.0	6	90	0	54	2	16	44	36	1.63
41978--42029	22	2.4	22	93	0	86	38	26	15	19	1.91
42029--42092	20	3.2	20	66	4	56	39	20	21	18	1.93
42019--42117	41	2.5	41	88	3	148	38	20	19	22	1.94
42163--42215	22	2.4	22	93	0	97	37	28	16	16	1.91
42905--42934	15	2.0	15	93	0	51	43	6	6	43	1.57
53021--53056	18	2.0	18	100	0	72	33	0	33	33	1.58
54793--54872	2	40.0	2	87	0	115	50	6	0	43	1.27
58106--58146	21	2.0	21	85	0	55	48	0	4	46	1.23
60195--60517	162	2.0	160	98	1	628	46	4	8	40	1.55
73456--73480	12	2.1	12	100	0	50	60	8	8	24	1.52
75783--75825	19	2.3	19	88	4	61	6	9	11	72	1.29
79243--79272	7	4.4	7	95	4	53	63	0	0	36	0.95
81116--81149	17	2.1	16	88	5	50	14	17	5	61	1.52
86441--86490	21	2.4	21	77	9	57	36	20	18	26	1.95
86502--86711	20	10.5	20	84	5	237	36	25	17	20	1.94
87404--87450	24	2.0	24	87	8	69	25	14	21	38	1.92
87625--87649	12	2.1	12	100	0	50	72	0	28	0	0.86
89927--90138	33	6.2	33	78	13	182	45	17	22	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89941--90106	53	3.2	53	92	2	273	46	16	21	15	1.84
89941--90144	19	11.7	19	71	21	178	45	17	22	15	1.85
89927--90144	86	2.5	88	85	10	290	44	17	22	15	1.85
90066--90120	14	3.6	14	73	21	56	45	20	23	10	1.82
90153--90231	19	4.4	19	80	16	105	13	22	17	45	1.84
90338--90374	14	2.6	14	91	0	65	45	21	0	32	1.52
92294--92466	19	9.6	19	76	12	150	46	23	19	10	1.81
92388--92444	14	3.7	14	75	20	51	43	22	22	10	1.84
92369--92461	33	2.8	33	93	0	159	47	21	20	10	1.80
92462--92552	19	5.4	18	71	26	74	7	16	27	48	1.73
92462--92584	33	3.7	33	87	2	167	8	17	26	47	1.77
92632--92914	93	3.1	93	98	0	550	45	19	12	22	1.83
94599--94705	19	5.7	20	77	15	104	46	18	23	11	1.81
94597--94661	21	3.1	21	82	4	96	47	15	26	10	1.78
94722--94778	14	3.7	14	75	20	60	8	24	22	43	1.81
94706--94785	33	2.4	33	95	0	142	8	21	22	47	1.78
94766--94839	21	3.5	21	80	7	96	14	20	17	47	1.83
94919--94989	33	2.2	33	92	0	115	49	16	22	11	1.78
95369--95561	20	9.6	20	85	5	246	18	19	27	34	1.95
95555--95604	21	2.4	20	80	9	55	26	18	20	36	1.95
102308--102360	22	2.4	22	100	0	106	11	11	60	16	1.59
108728--108768	16	2.7	16	81	7	50	70	2	24	2	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129591--129663	35	2.1	35	89	5	112	43	23	0	32	1.54
129591--129682	35	2.6	35	84	3	96	41	27	1	30	1.63
129840--130129	148	2.0	148	92	0	481	36	6	10	45	1.65
130582--130661	35	2.3	35	95	0	142	32	0	25	42	1.55
134156--134185	15	1.9	15	93	6	51	33	6	0	60	1.23
140772--140806	15	2.3	15	100	0	70	5	31	8	54	1.54
144534--144794	74	3.6	73	69	11	210	24	21	29	24	1.99
150641--150681	21	2.0	21	90	0	64	26	24	24	24	2.00
151158--151190	9	3.7	9	95	0	57	42	12	12	33	1.79
151270--151342	24	3.1	24	74	16	80	31	23	24	20	1.98
151592--151659	30	2.4	28	90	5	100	33	23	4	38	1.75
159131--159203	24	3.1	24	72	16	71	30	23	24	21	1.99
159453--159522	30	2.3	30	95	0	122	34	21	4	40	1.73
159564--159625	25	2.4	25	81	7	72	41	8	12	37	1.73
162864--162921	25	2.3	25	85	5	73	46	8	27	17	1.77
163793--163834	19	2.2	20	91	4	68	61	2	0	35	1.09
165194--165222	4	7.2	4	100	0	58	75	0	0	24	0.80
165896--165976	15	5.5	15	82	2	110	9	65	14	9	1.47
165900--165976	30	2.6	30	95	2	138	10	64	14	10	1.48
167243--167276	16	2.0	18	88	11	54	32	5	0	61	1.20
174501--174547	23	2.1	23	84	11	62	65	0	0	34	0.93
178123--178274	76	2.0	76	100	0	304	25	17	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181333--181376	15	2.9	15	86	3	52	61	2	36	0	1.09
181404--181470	34	2.2	32	84	15	88	29	0	14	55	1.40
184528--184600	33	2.2	33	90	2	112	36	1	13	47	1.52
184535--184631	11	8.4	11	74	20	74	41	2	11	45	1.52
184582--184632	24	2.2	22	89	6	75	47	1	5	45	1.38
184590--184641	24	2.2	23	83	13	61	50	1	3	44	1.31
185823--185865	23	2.0	21	86	9	59	46	0	6	46	1.30
187826--187892	31	2.2	31	94	0	116	16	34	20	28	1.95
192855--192890	18	2.0	18	100	0	72	5	5	50	38	1.49
193368--193474	18	6.0	18	94	1	171	28	28	6	36	1.82
201208--201271	29	2.2	29	97	0	119	64	3	14	18	1.42
202377--202513	67	2.0	67	97	0	256	29	10	10	49	1.70
202387--202531	67	2.2	67	91	0	227	31	10	10	48	1.71
204352--204380	14	2.1	14	100	0	58	31	13	6	48	1.69
207485--207524	15	2.6	16	80	8	55	32	0	5	62	1.17
215930--215973	21	2.0	22	86	4	63	2	25	0	72	0.96
217917--217944	2	14.0	2	100	0	56	50	0	0	50	1.00
218298--218350	23	2.2	24	83	12	65	24	18	24	32	1.97
220745--220797	22	2.4	23	93	6	92	49	11	30	9	1.70
222626--222673	2	24.0	2	100	0	96	50	0	0	50	1.00
225390--225453	29	2.2	29	83	10	85	59	7	15	17	1.59
234361--234407	23	2.0	24	83	4	60	23	8	23	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235266--235308	14	2.9	15	75	10	52	53	6	18	20	1.67
235323--235386	29	2.2	29	86	5	94	42	10	25	21	1.85
238778--238802	8	3.1	8	100	0	50	36	24	0	40	1.55
242330--242363	17	2.0	17	100	0	68	35	11	5	47	1.65
248419--248925	253	2.0	253	99	0	998	32	21	17	28	1.96
251145--251293	20	7.6	20	76	8	110	37	26	12	24	1.90
252184--252237	24	2.2	24	86	0	72	24	16	18	40	1.90
254325--254360	18	2.0	18	88	0	54	66	11	5	16	1.40
254686--254747	20	3.1	20	80	0	79	19	17	24	38	1.93
254838--254887	25	2.0	25	96	0	91	26	8	22	44	1.80

Tables:   1   2