genome.fa.s785.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000785.1 Hibiscus syriacus cultivar Beakdansim tig00001523_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195188

Tables:   1   2   

This is table  2  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123174--123251	12	6.8	12	71	17	67	41	15	21	21	1.90
123410--123480	29	2.5	28	88	6	106	18	23	36	21	1.95
124286--124330	21	2.0	23	87	8	67	55	2	0	42	1.12
130734--132963	262	8.5	263	83	2	2575	31	18	12	37	1.88
130749--132963	523	4.2	524	86	3	2721	31	18	12	37	1.88
134809--134927	63	1.9	62	83	8	152	34	21	15	28	1.94
142974--143046	32	2.3	32	78	0	83	16	28	30	24	1.96
143417--143487	29	2.4	29	97	0	133	36	4	9	49	1.56
151497--151551	2	27.5	2	100	0	110	50	49	0	0	1.00
151551--151599	2	24.5	2	100	0	98	51	0	0	48	1.00
151762--151826	12	5.4	12	72	7	51	55	16	12	15	1.69
151761--151868	24	4.5	24	71	11	87	48	16	15	19	1.82
151758--151851	48	2.0	48	89	4	145	50	15	13	20	1.78
154282--154327	18	2.6	18	92	0	74	10	19	50	19	1.77
154276--154305	13	2.3	13	94	0	51	16	23	43	16	1.87
156383--156450	12	5.8	12	71	13	52	52	19	13	14	1.73
156382--156487	24	4.5	24	72	11	85	48	16	16	18	1.82
158590--158625	15	2.4	15	100	0	72	52	13	0	33	1.41
161077--161137	28	2.2	28	82	5	70	27	3	24	44	1.69
161078--161136	21	2.8	21	82	5	57	25	3	25	45	1.69
163249--163331	29	2.8	29	92	1	139	43	9	14	32	1.78
166699--166728	15	2.0	15	93	0	51	20	0	23	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168014--168096	29	2.8	29	92	1	139	43	9	14	32	1.78
169684--169719	15	2.3	16	90	4	56	5	44	2	47	1.41
171656--171705	22	2.3	22	100	0	100	36	14	24	26	1.93
178362--178396	17	2.1	17	100	0	70	22	17	31	28	1.96
185261--185300	2	20.0	2	100	0	80	50	0	0	50	1.00
185710--185786	21	3.6	21	72	10	66	25	24	18	31	1.97
186190--186266	21	3.7	21	98	0	145	33	16	6	42	1.74
188932--188956	2	12.5	2	100	0	50	48	0	0	52	1.00
190896--191043	67	2.2	66	81	4	163	31	13	11	43	1.79
191518--191647	62	2.1	61	87	4	181	35	23	12	29	1.91
194664--194693	10	3.0	10	90	0	51	56	10	3	30	1.48

Tables:   1   2

The End!