genome.fa.s7850.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007850.1 Hibiscus syriacus cultivar Beakdansim tig00110209_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1775394

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1055 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148346--148387	18	2.3	18	91	0	66	54	0	28	16	1.42
148432--148912	42	11.7	41	78	5	407	34	19	17	28	1.94
148444--148813	83	4.5	83	81	6	383	35	19	17	27	1.94
148453--148912	123	3.7	123	82	5	454	34	19	17	28	1.94
149214--149274	31	1.9	31	83	3	77	22	16	19	40	1.90
150796--151053	70	3.5	73	82	7	319	40	13	12	32	1.83
158252--158314	24	2.7	23	82	4	81	23	25	26	23	2.00
159494--159526	16	1.9	17	88	11	50	36	0	3	60	1.12
159490--159528	17	2.3	19	79	20	50	33	0	2	64	1.08
167743--167929	99	1.9	99	87	2	277	41	8	18	32	1.80
169314--169574	100	2.6	101	76	7	264	37	16	12	34	1.86
169217--169576	199	1.8	199	80	6	433	37	15	12	33	1.86
170551--170701	73	2.1	74	94	1	268	37	5	15	41	1.71
172386--172435	3	17.0	3	82	12	59	68	2	28	2	1.12
180352--180470	33	3.6	33	78	4	123	15	5	31	47	1.69
184454--184503	25	2.0	24	88	3	73	36	4	2	58	1.29
189495--189555	28	2.2	27	83	13	72	45	0	4	49	1.23
191530--191779	20	12.2	20	77	12	224	40	24	18	16	1.91
191613--191779	42	4.1	41	92	3	225	38	25	17	17	1.92
191530--191779	102	2.4	102	86	5	319	40	24	18	16	1.91
191633--191779	42	3.5	42	93	3	237	38	25	18	17	1.92
191875--191977	6	17.5	6	98	1	192	32	51	16	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192477--192598	6	20.5	6	99	0	237	0	16	50	32	1.45
192701--193083	20	18.8	20	84	10	435	16	19	27	36	1.93
192701--193088	40	9.5	40	89	7	502	16	19	27	37	1.93
192694--193143	60	7.4	58	82	11	435	16	19	26	38	1.92
193095--193145	19	2.6	20	78	12	52	11	19	25	43	1.85
199895--199928	9	3.8	9	100	0	68	44	35	0	20	1.52
203856--204644	406	1.9	406	97	0	1499	37	14	14	32	1.88
208991--209028	15	2.5	15	91	0	58	31	23	7	36	1.84
217799--219013	405	3.0	405	98	0	2362	26	19	17	36	1.94
224036--224073	3	12.7	3	94	0	67	0	34	2	63	1.09
229983--230563	158	3.7	154	81	7	613	30	17	5	47	1.69
233720--233760	20	2.0	20	100	0	82	46	14	0	39	1.45
240241--240307	29	2.3	29	97	0	125	40	28	4	26	1.75
240241--240317	29	2.6	28	91	4	109	37	31	5	25	1.78
247322--247449	29	4.4	29	90	2	177	36	27	5	30	1.79
258030--258088	29	2.0	29	83	6	73	50	1	1	45	1.21
258043--258289	120	2.0	120	81	6	286	46	8	6	37	1.62
259840--259903	3	21.3	3	80	6	76	60	0	0	39	0.97
260067--260397	76	4.4	76	95	1	587	34	22	19	23	1.96
260067--260397	150	2.2	151	95	1	585	34	22	19	23	1.96
265736--265800	9	7.6	9	72	19	50	3	20	0	76	0.91
265745--265834	41	2.2	41	97	2	171	4	18	0	76	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265730--265834	17	6.8	17	72	24	81	3	20	0	76	0.94
268684--268773	36	2.5	36	78	7	94	55	10	16	17	1.68
270488--270523	2	18.0	2	100	0	72	50	0	0	50	1.00
271704--271742	18	2.2	18	85	0	51	66	0	0	33	0.92
271619--271844	114	2.0	110	81	9	260	46	7	8	37	1.64
271891--271924	17	1.9	18	94	5	61	50	0	0	50	1.00
271993--272045	20	2.5	20	84	6	61	66	3	1	28	1.20
273358--273414	21	2.5	23	83	8	64	59	0	0	40	0.97
273357--273414	3	19.3	3	75	7	55	58	0	0	41	0.98
273357--273414	24	2.5	24	86	8	77	58	0	0	41	0.98
275231--275353	60	2.0	60	90	0	192	28	20	13	38	1.90
280783--280807	12	2.1	12	100	0	50	56	0	36	8	1.29
289987--290072	42	2.0	42	84	0	109	51	5	10	32	1.60
293279--293515	41	5.9	41	81	8	240	30	10	20	37	1.87
293368--293515	77	1.9	77	86	2	208	31	10	21	35	1.88
296241--296280	18	2.2	18	95	0	71	17	2	35	45	1.62
296252--296309	18	3.2	18	85	4	64	18	13	34	32	1.91
296267--296313	18	2.6	18	89	0	67	23	19	29	27	1.98
297474--297540	31	2.2	31	88	0	98	47	8	8	34	1.66
305158--305228	35	2.0	35	86	5	99	25	8	12	53	1.66
306758--306992	88	2.7	88	98	0	452	43	5	14	36	1.69
318315--318357	19	2.1	21	83	8	54	44	16	11	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320136--320197	24	2.6	24	84	0	88	11	11	24	53	1.69
321707--321781	10	7.7	10	68	21	52	10	9	20	60	1.57
321713--321785	16	4.7	16	84	3	96	10	8	19	61	1.53
321713--321777	32	2.0	32	93	0	112	9	9	21	60	1.55
321847--321878	16	2.0	16	100	0	64	6	12	25	56	1.59
323452--323594	74	1.9	74	80	5	164	24	25	16	34	1.95
327282--327326	23	1.9	24	90	4	74	24	13	17	44	1.85
327350--327402	24	2.3	23	87	6	79	24	13	18	43	1.86
327275--327395	58	2.1	58	87	1	170	24	16	18	40	1.90
327960--327992	16	1.9	18	88	11	52	48	3	6	42	1.43
329177--329269	21	4.6	20	78	4	96	38	18	24	18	1.92
329174--329269	41	2.3	41	98	0	183	39	17	23	18	1.92
329177--329269	20	4.6	20	78	4	96	38	18	24	18	1.92
329196--329330	41	3.3	41	81	6	123	37	20	21	20	1.94
329258--329352	20	4.7	20	80	2	91	34	24	17	23	1.96
329540--329583	22	2.0	22	90	0	70	20	43	15	20	1.88
329847--329884	20	1.9	20	88	0	58	13	15	21	50	1.78
331204--331248	18	2.5	18	85	0	63	26	42	15	15	1.87
331721--331766	20	2.3	20	84	0	56	39	26	19	15	1.91
331760--331855	19	5.6	18	69	25	66	46	22	18	11	1.81
331776--331833	14	3.9	14	79	16	71	48	25	17	8	1.75
331760--331850	32	2.8	32	93	3	146	48	23	17	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331867--331924	14	3.9	14	79	16	71	8	17	25	48	1.75
331862--331940	32	2.4	33	97	2	151	8	18	25	46	1.78
333750--333942	33	5.8	33	85	4	282	41	19	23	15	1.89
333751--333949	66	3.0	66	97	0	371	41	19	23	16	1.90
333942--333986	20	2.3	20	81	7	58	17	17	20	44	1.87
334125--334161	14	2.6	14	91	0	65	45	24	0	29	1.53
335826--335919	20	4.7	20	77	2	80	23	17	24	35	1.95
335908--336003	41	2.3	41	98	0	147	18	23	17	39	1.92
335908--336000	20	4.6	20	78	4	96	18	24	18	38	1.92
341414--341456	21	2.0	21	86	0	59	30	32	25	11	1.91
343049--343115	23	3.0	22	75	14	64	23	25	22	28	1.99
344280--344313	17	2.0	17	88	0	50	38	23	5	32	1.79
350879--350920	2	21.5	2	95	4	77	50	0	0	50	1.00
352158--352257	49	2.0	49	86	0	137	41	5	12	42	1.64
363632--363672	21	1.9	22	85	5	57	29	17	12	41	1.85
365569--365593	2	12.5	2	100	0	50	52	0	0	48	1.00
367208--367424	116	1.9	116	97	0	407	45	12	6	35	1.68
369948--370019	4	17.8	4	79	16	69	75	1	2	20	1.01
369970--370096	5	26.0	5	69	18	54	75	3	3	17	1.08
369948--370028	29	2.7	30	76	16	78	75	1	2	20	0.99
371915--371986	24	3.0	23	72	10	63	20	8	1	69	1.22
382443--382530	45	1.9	46	93	2	151	45	17	22	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383324--383996	98	6.8	98	93	1	1093	33	23	19	22	1.97
383531--383690	43	3.4	43	67	18	122	33	25	20	21	1.97
390392--390442	18	2.9	17	82	8	66	27	29	7	35	1.85
395616--395669	27	2.0	27	82	7	65	31	11	27	29	1.91
396660--396718	24	2.5	24	94	0	100	33	16	18	30	1.94
398498--398531	15	2.3	15	94	0	59	32	32	20	14	1.93
398616--398745	29	4.5	29	95	0	226	17	19	17	45	1.86
405427--405460	15	2.3	15	94	0	59	32	32	20	14	1.93
405545--405674	29	4.5	29	98	0	244	18	20	16	44	1.87
410019--410079	28	2.2	28	83	11	74	39	0	1	59	1.08

Tables:   1   2   3   4   5   6   7   8   9