genome.fa.s7854.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007854.1 Hibiscus syriacus cultivar Beakdansim tig00110214_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  276407

Tables:   1   2   

This is table  2  of  2  ( 173 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182148--182218	21	3.6	20	73	14	60	25	4	1	69	1.15
182147--182208	11	5.9	10	83	9	70	25	4	1	67	1.19
183963--183989	13	2.1	13	100	0	54	29	33	0	37	1.58
186071--186109	20	2.0	20	84	0	51	23	7	23	46	1.78
193092--193256	15	10.5	15	77	14	145	45	1	3	50	1.25
193204--193279	32	2.4	32	95	0	134	35	0	10	53	1.35
193339--193533	22	8.0	22	72	20	147	35	0	12	51	1.40
193309--193904	54	11.3	54	70	18	364	34	0	13	52	1.40
193339--193989	76	8.3	76	82	11	737	34	0	13	52	1.41
193227--193855	210	3.0	209	91	4	862	34	0	13	52	1.41
193534--193593	18	3.6	18	73	17	65	33	0	10	56	1.32
193581--193743	22	6.8	22	72	18	128	34	0	13	51	1.41
193599--193999	80	5.0	82	84	11	418	33	0	13	52	1.41
193730--193807	32	2.5	30	95	0	102	37	0	8	53	1.32
193748--193803	18	3.3	18	73	19	66	32	0	10	57	1.33
193858--193905	22	2.4	18	73	23	51	33	0	14	52	1.42
194094--194132	16	2.4	16	91	0	60	23	5	5	66	1.32
196647--196681	2	17.5	2	100	0	70	51	0	0	48	1.00
199020--199094	37	2.0	37	100	0	150	33	24	10	32	1.89
205852--205919	21	3.2	21	100	0	136	22	38	16	23	1.93
209057--209081	2	12.5	2	100	0	50	48	0	0	52	1.00
217160--217327	32	5.0	32	79	15	164	43	5	7	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217201--217257	11	5.3	11	72	19	57	42	7	8	42	1.63
217135--217326	103	1.9	103	86	4	280	45	5	6	42	1.54
217193--217388	71	2.7	71	81	7	232	42	5	8	43	1.57
217356--217409	24	2.1	27	86	13	78	37	0	9	53	1.33
217389--217436	18	2.6	18	83	9	53	33	0	4	62	1.14
217388--217435	11	4.2	11	79	15	53	35	0	4	60	1.16
218400--218431	13	2.5	13	100	0	64	40	12	46	0	1.42
218795--218860	11	5.8	12	71	15	52	21	4	0	74	1.00
223853--224488	166	3.8	164	90	2	909	29	27	21	22	1.99
225158--225204	18	2.6	18	83	6	60	46	12	0	40	1.42
225319--225343	12	2.1	12	100	0	50	44	8	8	40	1.63
225356--225380	11	2.3	11	100	0	50	40	8	8	44	1.63
225257--225448	104	1.8	105	85	5	273	45	6	6	41	1.56
225314--225467	71	2.1	74	86	4	217	40	6	8	44	1.60
225326--225495	71	2.3	70	81	7	187	44	6	8	41	1.60
225533--225561	3	9.7	3	100	0	58	31	0	0	68	0.89
226528--226559	13	2.5	13	100	0	64	40	12	46	0	1.42
226924--226996	11	6.7	11	71	18	55	21	4	0	73	0.99
227550--227589	2	20.0	2	100	0	80	50	0	0	50	1.00
228488--228755	135	2.0	136	90	0	421	36	13	9	40	1.77
229346--229406	31	1.9	33	83	12	83	42	1	1	54	1.20
230045--230088	16	2.6	17	92	7	81	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230698--230727	5	5.8	5	96	4	51	80	0	0	20	0.72
243825--243859	2	17.5	2	100	0	70	48	0	0	51	1.00
245864--245978	60	1.9	60	83	3	151	34	23	4	37	1.75
251430--251470	21	2.0	21	85	9	57	60	0	7	31	1.24
265723--265819	41	2.4	41	94	0	167	22	13	10	53	1.69
267912--267985	33	2.4	29	72	16	69	48	0	4	47	1.20
270601--270640	15	2.4	18	88	12	59	55	0	2	42	1.13
270694--270765	24	2.8	24	83	8	81	54	2	0	43	1.15
270655--270767	11	9.3	12	71	18	74	53	1	0	45	1.11

Tables:   1   2

The End!