genome.fa.s7854.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007854.1 Hibiscus syriacus cultivar Beakdansim tig00110214_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  276407

Tables:   1   2   

This is table  1  of  2  ( 173 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14045--14101	29	2.0	29	96	0	105	43	14	14	28	1.83
14152--14178	13	2.1	13	100	0	54	22	25	14	37	1.93
18636--18692	29	2.0	29	100	0	114	45	14	14	26	1.82
25145--25198	18	2.8	20	72	16	51	44	22	5	27	1.75
27566--27651	45	1.9	45	92	0	145	50	6	6	36	1.57
31282--31432	83	1.8	83	82	2	198	33	15	15	36	1.89
44358--44567	91	2.3	90	93	2	350	38	8	11	40	1.73
48221--48279	26	2.2	28	87	6	86	44	5	5	45	1.47
55065--55089	6	4.2	6	100	0	50	32	0	48	20	1.50
57884--57964	27	3.1	26	77	7	83	39	9	30	19	1.84
59936--60013	20	3.7	20	89	6	111	30	19	23	26	1.98
60980--61007	5	5.6	5	100	0	56	39	0	21	39	1.54
61718--61786	30	2.3	31	92	2	113	37	2	27	31	1.72
62435--62462	5	5.6	5	100	0	56	39	0	21	39	1.54
63173--63241	30	2.3	31	92	2	113	40	2	24	31	1.70
64099--64139	21	2.0	21	90	0	64	26	24	24	24	2.00
65815--65860	16	2.9	16	96	0	83	50	26	10	13	1.74
65996--66036	20	2.2	19	86	8	57	58	2	0	39	1.11
66032--66067	14	2.5	15	86	13	58	69	2	11	16	1.29
66003--66099	23	4.1	22	69	20	63	61	1	6	30	1.27
68319--68433	42	2.7	42	91	0	194	17	17	19	46	1.85
68622--68682	22	2.8	23	82	7	65	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68648--68750	54	1.9	52	84	11	138	48	0	0	49	1.14
68631--68804	30	5.9	30	68	23	104	46	1	1	51	1.16
68965--69034	20	3.5	20	96	0	131	35	14	10	40	1.79
68965--69043	40	2.0	40	89	0	122	35	15	8	40	1.78
69017--69083	15	4.5	15	84	3	91	34	19	7	38	1.80
69017--69088	30	2.4	30	97	2	137	31	19	6	41	1.78
74575--74617	10	4.0	11	82	11	54	41	0	25	32	1.56
74575--74616	11	3.8	11	84	9	59	42	0	23	33	1.55
75224--75281	29	2.0	29	100	0	116	20	10	6	62	1.50
75377--75556	60	3.0	59	79	4	182	32	20	4	42	1.72
76118--76205	28	3.0	28	73	9	79	52	3	13	30	1.57
78499--78527	6	4.8	6	100	0	58	17	65	17	0	1.27
81282--81408	50	2.5	50	96	0	227	35	7	15	41	1.75
84576--84797	111	2.0	111	92	0	372	45	10	6	36	1.65
85027--85151	50	2.5	50	85	2	180	20	28	35	16	1.93
94301--94364	3	21.3	3	90	0	101	64	1	3	31	1.19
104126--104177	3	17.3	3	87	0	77	63	1	3	30	1.23
113825--113870	3	15.3	3	86	0	65	63	2	4	30	1.26
120408--120525	21	5.7	21	70	6	71	34	26	17	21	1.95
120513--120565	21	2.6	20	82	11	63	43	26	18	11	1.84
120552--120704	20	7.7	20	83	5	204	33	26	19	20	1.96
120552--120700	79	1.9	79	87	2	219	34	25	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121145--121219	21	3.7	21	75	13	93	45	18	24	12	1.83
121156--121246	19	4.9	19	67	22	77	45	19	23	12	1.84
121204--121260	14	3.7	14	75	20	60	43	22	24	8	1.81
121196--121276	33	2.5	33	95	0	144	46	22	22	8	1.78
121293--121349	14	3.7	14	75	20	60	8	24	22	43	1.81
121277--121398	33	3.5	33	86	11	156	10	24	18	45	1.81
121334--121398	21	3.1	21	78	12	89	10	26	15	47	1.78
123374--123432	14	3.9	14	76	20	64	47	27	16	8	1.76
123317--123448	33	3.8	33	86	5	183	47	28	16	7	1.74
123317--123454	52	2.7	51	76	7	170	46	27	17	8	1.77
123301--123448	19	8.3	19	79	15	163	46	28	16	8	1.76
123444--123616	19	9.6	19	76	12	159	10	20	23	45	1.81
123466--123522	14	3.7	14	75	20	51	10	22	22	43	1.84
123444--123616	33	4.8	38	80	8	168	10	20	23	45	1.81
125533--125568	14	2.6	14	95	0	63	33	0	22	44	1.53
125675--125772	19	5.4	19	82	15	127	44	17	23	14	1.85
125675--125791	53	2.2	53	95	4	211	43	17	24	13	1.86
125781--125937	19	8.7	19	80	16	199	15	21	17	45	1.85
125787--125951	53	3.1	52	83	14	214	13	21	18	46	1.84
125781--125937	72	2.2	72	94	2	271	15	21	17	45	1.85
125805--125951	33	4.2	33	81	13	188	13	21	18	46	1.83
125805--125970	53	3.1	53	75	11	178	13	20	19	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128229--128253	12	2.1	12	100	0	50	0	28	0	72	0.86
128428--128474	24	2.0	24	87	8	69	38	21	14	25	1.92
129167--129395	20	11.4	20	87	1	253	18	17	26	37	1.93
138686--138776	29	3.0	29	71	16	69	48	2	1	48	1.21
138887--138931	23	2.0	23	86	0	63	53	2	2	42	1.25
139197--139269	14	4.7	14	72	18	56	47	5	1	45	1.34
139825--139932	55	2.0	54	92	5	182	54	7	11	26	1.62
139879--139939	32	2.0	32	93	6	108	57	6	9	26	1.55
143521--143576	14	4.1	14	77	9	53	5	5	7	82	0.96
143522--143564	19	2.2	20	80	19	56	6	2	6	83	0.88
143743--143792	21	2.4	21	100	0	100	34	28	18	20	1.95
150880--150932	21	2.5	21	81	0	70	18	28	18	33	1.95
150922--150973	21	2.5	21	87	3	70	38	17	23	21	1.93
150922--151011	20	4.4	21	76	9	87	37	16	22	23	1.93
150940--151034	41	2.3	41	94	0	154	35	17	23	23	1.95
150962--151035	20	3.7	20	71	10	78	33	18	22	24	1.97
151024--151116	20	4.6	20	86	2	105	22	20	18	38	1.93
151106--151217	20	5.6	20	84	6	120	38	21	19	20	1.94
151106--151199	41	2.3	41	83	5	120	40	20	20	19	1.92
151731--151797	19	3.5	19	81	2	80	47	23	16	11	1.80
151815--151870	14	3.6	14	74	21	58	8	25	23	42	1.82
151798--151894	33	2.9	33	95	1	167	10	23	21	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151859--151917	20	3.0	20	84	0	73	13	22	18	45	1.84
153988--154054	21	3.2	21	66	6	55	23	35	20	19	1.95
155367--155402	14	2.6	14	90	0	54	27	0	27	44	1.55
155509--155571	19	3.6	19	71	20	64	44	19	23	12	1.85
155576--155674	19	5.7	19	66	22	74	14	22	20	43	1.87
155580--155687	33	3.3	32	84	10	146	14	23	19	42	1.88
155573--155706	66	2.0	67	88	1	198	17	22	20	40	1.91
157979--158003	12	2.1	12	100	0	50	0	28	0	72	0.86
158190--158236	24	2.0	24	91	0	76	34	17	19	29	1.94
158194--158245	24	2.2	24	82	0	59	36	19	17	26	1.94
159052--159143	20	4.6	20	73	2	76	39	21	18	20	1.93
159357--159450	20	4.7	20	76	5	100	39	22	21	17	1.92
159377--159456	40	2.0	40	95	0	142	42	21	20	16	1.89
159476--159520	19	2.4	19	100	0	90	15	20	17	46	1.84
161546--161678	20	7.5	18	70	21	84	43	21	20	14	1.87
161605--161694	14	5.8	14	71	21	72	47	22	17	12	1.80
161588--161710	33	3.8	33	91	2	194	46	23	17	12	1.82
161588--161710	65	1.9	66	89	5	196	46	23	17	12	1.82
161706--161802	19	5.6	19	71	22	97	14	19	20	45	1.85
161728--161786	14	3.9	14	78	20	64	13	16	22	47	1.82
161711--161802	33	2.8	33	93	0	157	14	18	20	46	1.83
161787--161830	20	2.2	20	84	4	54	18	22	20	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161796--161841	20	2.3	20	92	0	74	15	19	26	39	1.91
162323--162368	18	2.6	18	85	0	65	15	15	41	28	1.87
163687--163743	20	2.8	20	78	0	51	43	17	15	22	1.87
164243--164291	20	2.5	20	86	0	71	24	18	30	26	1.98
164219--164356	61	2.3	61	84	0	186	23	15	23	36	1.93
164304--164353	20	2.5	20	96	0	91	26	18	26	30	1.98
164424--164464	21	2.0	21	85	0	55	34	29	17	19	1.94
166834--166971	68	2.0	68	100	0	276	32	10	13	44	1.77
181487--181548	21	3.0	21	75	17	67	38	3	0	58	1.15
181536--181642	29	3.6	28	75	22	78	48	2	2	45	1.31

Tables:   1   2