genome.fa.s7862.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007862.1 Hibiscus syriacus cultivar Beakdansim tig00110229_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  338149

Tables:   1   2   

This is table  1  of  2  ( 176 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2580--2607	8	3.5	8	100	0	56	50	10	0	39	1.37
18287--18328	21	2.0	21	100	0	84	19	4	19	57	1.58
19827--19851	11	2.3	11	100	0	50	8	24	0	68	1.16
21111--21136	3	8.7	3	100	0	52	65	0	0	34	0.93
21123--21174	16	3.1	16	78	13	52	50	0	3	46	1.20
22682--22708	14	1.9	14	100	0	54	51	7	7	33	1.58
23472--23512	20	2.0	21	85	4	57	31	7	4	56	1.48
28869--29017	32	4.7	32	88	1	165	30	13	19	36	1.90
31162--31320	21	7.6	21	87	8	234	31	18	25	25	1.97
31162--31320	42	3.8	42	98	0	300	31	18	25	25	1.97
31162--31320	63	2.5	63	93	2	266	31	18	25	25	1.97
32412--32502	31	2.9	32	77	6	105	36	18	18	26	1.94
35534--35563	13	2.3	13	94	0	51	23	3	0	73	0.98
36547--36596	21	2.4	21	76	6	57	22	24	18	36	1.95
36604--36768	41	4.0	41	75	9	156	38	20	20	21	1.94
36603--36761	83	1.9	83	90	0	255	38	19	20	20	1.93
36603--36720	21	5.7	21	80	11	127	38	16	22	22	1.93
36717--36863	20	7.3	20	83	4	152	29	26	19	24	1.99
36623--36883	41	6.4	41	74	9	147	34	22	19	23	1.96
37603--37656	24	2.2	24	90	0	81	22	16	20	40	1.91
40155--40198	20	2.2	20	92	4	72	36	18	22	22	1.95
40162--40269	19	6.2	19	67	21	74	44	16	22	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40182--40308	33	3.8	33	90	0	191	47	17	22	13	1.82
40322--40386	33	2.0	33	93	0	112	9	18	23	49	1.76
40504--40540	14	2.6	14	86	0	56	45	18	0	35	1.50
41890--41956	21	3.2	21	68	4	55	19	20	35	23	1.95
41890--42012	42	2.9	41	78	7	104	23	17	36	21	1.95
42401--42705	94	3.3	94	93	3	512	46	19	12	21	1.82
44279--44343	25	2.6	25	100	0	130	50	16	10	21	1.75
44410--44472	20	3.2	20	80	8	74	46	15	23	14	1.83
44513--44601	14	5.6	14	69	23	52	12	20	22	44	1.84
44497--44622	33	3.8	33	89	1	171	12	19	23	44	1.85
44527--44588	19	3.6	18	73	22	69	11	19	22	46	1.81
45181--45254	20	3.7	20	87	3	112	21	21	17	39	1.93
45181--45377	41	4.8	41	74	10	161	27	19	18	34	1.95
45251--45306	20	2.7	21	80	5	69	42	16	21	19	1.89
45244--45316	21	3.5	21	79	3	76	36	17	21	23	1.94
45326--45377	20	2.5	20	81	3	59	21	21	17	40	1.91
45367--45419	21	2.5	22	81	6	74	33	18	26	20	1.96
57130--57185	24	2.3	24	96	0	103	37	17	17	26	1.93
59173--59223	20	2.5	20	96	0	93	45	25	11	17	1.83
59266--59308	19	2.3	19	100	0	86	46	16	4	32	1.67
59783--59865	20	4.2	20	96	0	157	49	21	19	9	1.76
59862--59909	20	2.5	19	86	6	69	14	16	20	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59872--59915	20	2.2	20	87	0	61	15	18	15	50	1.79
61564--61613	21	2.4	21	82	0	64	22	14	32	32	1.93
62023--62128	21	5.0	22	71	9	94	20	34	17	26	1.95
62019--62141	42	2.9	42	86	0	156	21	34	18	26	1.96
63482--63630	64	2.3	64	91	2	237	28	2	16	51	1.58
63949--63984	18	2.0	18	88	0	54	16	0	22	61	1.35
66252--66322	24	3.0	24	93	0	124	33	18	22	25	1.96
66443--66476	12	2.8	12	90	0	50	14	0	29	55	1.40
67244--67370	20	6.4	19	73	14	80	33	14	23	28	1.95
67320--67421	20	5.0	20	80	9	98	28	13	27	30	1.94
67264--67392	40	3.2	40	83	1	159	31	13	25	28	1.94
67315--67421	21	5.1	21	77	10	94	30	13	26	29	1.93
67336--67439	41	2.5	41	78	7	104	30	10	27	30	1.90
75220--75254	13	2.7	13	95	0	61	31	11	14	42	1.81
75991--76053	12	5.2	12	72	9	56	31	7	38	22	1.83
75987--76053	25	2.7	25	95	2	118	31	7	37	23	1.83
76002--76045	13	3.5	13	75	6	54	31	6	40	20	1.79
78548--78600	21	2.5	21	96	0	97	30	15	15	39	1.87
79148--79211	33	1.9	33	87	6	94	32	17	25	25	1.96
88589--88622	4	8.5	4	100	0	68	76	0	0	23	0.79
94903--94950	18	2.7	18	90	6	71	20	20	10	47	1.79
96980--97063	5	17.0	5	92	7	145	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98224--98380	82	1.9	82	90	1	253	35	6	22	35	1.80
98504--98582	36	2.1	39	81	11	94	54	3	0	41	1.18
100473--100520	18	2.7	18	75	12	53	64	10	14	10	1.49
102110--102152	21	2.0	21	81	0	50	27	11	4	55	1.55
103437--103462	4	6.5	4	100	0	52	26	0	73	0	0.84
108800--108836	19	1.9	19	94	0	65	29	2	2	64	1.21
109212--109256	23	2.0	22	87	8	65	73	0	13	13	1.10
109236--109270	13	2.6	14	95	4	63	71	0	20	8	1.11
112808--112863	25	2.1	28	80	12	64	14	10	14	60	1.58
125317--125392	21	3.6	21	71	13	66	26	22	21	30	1.99
126246--126339	21	4.7	19	79	7	107	34	24	20	21	1.97
128792--128840	22	2.2	23	88	3	73	75	0	4	20	0.96
130537--130633	28	3.5	28	70	16	94	18	22	15	43	1.88
130728--130775	21	2.3	21	85	3	71	83	4	2	10	0.87
130725--130783	31	2.0	29	90	6	91	79	5	3	11	1.01
137105--137268	76	2.2	76	86	3	224	56	10	3	29	1.48
138807--138853	23	2.0	23	95	0	85	25	27	12	34	1.92
144896--144938	21	2.0	21	100	0	86	20	4	13	60	1.51
145908--145936	15	1.9	15	100	0	58	27	31	27	13	1.94
149199--149249	25	2.1	24	88	3	75	39	11	25	23	1.89
154477--154526	15	2.8	19	77	22	72	50	0	0	50	1.00
154491--154645	15	9.8	15	76	15	143	45	0	3	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154475--154518	19	2.3	19	88	0	70	43	0	0	56	0.99
154607--154663	18	3.4	18	69	18	59	33	0	12	54	1.38
154593--154668	32	2.4	32	97	0	143	36	0	9	53	1.33
154698--154802	32	3.6	32	72	24	122	35	0	11	53	1.37
154782--154890	22	5.0	22	97	0	200	36	0	11	51	1.39
154870--154954	32	2.7	32	98	0	161	32	0	12	54	1.39
154846--155034	80	2.3	83	88	7	287	33	0	13	52	1.41
154982--155066	32	2.7	32	96	0	152	36	0	11	51	1.39
155046--155110	22	3.0	22	93	0	112	38	0	12	49	1.41
155099--155152	14	3.6	14	72	18	54	37	0	5	57	1.22
155094--155174	32	2.5	32	95	0	144	34	0	11	54	1.36
155068--155351	80	3.5	80	91	4	419	33	0	13	52	1.44
154593--155254	220	3.1	220	84	11	849	34	0	12	52	1.40
155315--155358	22	2.0	22	95	4	81	34	0	13	52	1.41
155381--155439	31	1.9	31	92	0	100	42	10	6	40	1.65
155457--155499	16	2.7	16	92	0	68	23	6	6	62	1.45
163771--163815	21	2.1	21	91	0	72	31	4	2	62	1.27
165628--165688	19	2.9	22	79	18	76	37	13	0	49	1.42
165639--165684	19	2.4	19	96	3	83	39	13	0	47	1.42
176721--176763	18	2.4	18	96	0	77	41	16	23	18	1.89
177722--177764	18	2.4	18	92	0	68	39	32	9	18	1.83
184610--184644	18	1.9	18	100	0	70	25	34	22	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185195--185245	20	2.5	20	96	0	93	27	17	25	29	1.98
185294--185378	30	2.9	29	79	8	91	41	4	20	34	1.73
185294--185351	29	2.0	29	89	3	89	41	5	20	32	1.75
191783--191917	51	2.6	51	82	2	146	17	32	27	22	1.96
195658--195739	24	3.3	24	75	21	96	70	6	2	20	1.20
195626--195758	51	2.7	49	90	4	180	66	5	5	23	1.33
195656--195758	51	2.0	51	100	0	206	68	5	3	21	1.27
195670--195749	24	3.2	24	74	22	92	67	7	3	21	1.32
196181--196255	36	2.1	36	100	0	150	26	20	42	10	1.84
197808--198029	111	2.0	111	96	0	408	45	10	7	36	1.68

Tables:   1   2