genome.fa.s7862.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007862.1 Hibiscus syriacus cultivar Beakdansim tig00110229_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  338149

Tables:   1   2   

This is table  2  of  2  ( 176 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198319--198448	50	2.6	50	75	2	127	20	26	33	18	1.96
202863--202946	23	3.7	23	86	0	114	29	23	26	20	1.99
209777--209820	23	1.9	23	95	0	79	31	22	25	20	1.98
213127--213154	13	2.2	13	100	0	56	50	17	21	10	1.77
220906--220944	20	2.0	20	89	0	60	33	23	10	33	1.88
227832--227941	40	2.8	40	91	0	184	32	26	16	24	1.96
230098--230131	12	3.0	11	87	8	50	32	0	0	67	0.91
230105--230132	12	2.3	12	100	0	56	28	0	0	71	0.86
231650--231680	11	2.7	11	95	5	53	6	3	0	90	0.55
231689--231743	21	2.7	20	80	13	58	29	1	1	67	1.11
257664--257728	30	2.2	30	94	0	112	52	0	47	0	1.00
257667--257728	25	2.5	25	92	5	99	53	0	46	0	1.00
257667--257725	5	11.8	5	85	7	75	54	0	45	0	0.99
265358--265406	23	2.2	23	88	3	73	61	12	10	16	1.57
267873--267949	35	2.2	33	84	8	100	37	0	18	44	1.50
269755--269795	21	2.0	21	100	0	82	51	4	4	39	1.45
273055--273127	38	1.9	37	84	13	96	54	10	8	26	1.63
273053--273139	35	2.5	34	80	12	97	56	10	6	26	1.58
273350--273393	3	14.7	3	80	0	52	6	31	25	36	1.82
273346--273390	18	2.5	18	92	0	72	8	31	24	35	1.86
273741--273777	18	2.1	18	94	0	65	24	16	29	29	1.96
275459--275499	18	2.3	18	91	4	66	65	0	4	29	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275547--275581	10	3.5	10	84	0	52	42	0	25	31	1.55
278942--278984	2	21.5	2	100	0	86	51	0	48	0	1.00
282046--282084	17	2.3	17	100	0	78	51	0	15	33	1.44
282087--282127	17	2.4	18	81	18	52	53	9	9	26	1.65
286798--286861	14	4.9	14	71	22	59	12	9	15	62	1.54
291343--291447	37	2.8	37	85	0	138	40	15	13	31	1.85
291986--292011	13	2.0	13	100	0	52	23	7	0	69	1.14
291873--292076	105	1.9	105	79	9	229	26	7	2	63	1.33
292298--292343	19	2.5	19	83	13	60	17	8	0	73	1.07
293490--293526	19	1.9	19	89	10	58	8	24	0	67	1.17
296918--296978	14	4.3	13	74	15	50	80	3	11	4	0.99
296919--296976	20	2.8	20	80	15	55	79	3	12	5	1.02
298584--299460	106	8.3	106	92	0	1421	34	25	17	22	1.96
298584--299834	212	6.0	212	86	4	1745	34	25	17	22	1.95
298584--299834	318	4.0	317	88	4	1813	34	25	17	22	1.95
299268--299834	192	2.8	193	83	6	672	35	25	17	22	1.95
299401--299548	43	3.4	43	67	15	117	37	25	14	22	1.93
299056--299834	404	1.9	404	92	1	1294	35	25	17	22	1.95
299162--299758	298	2.0	298	91	0	978	36	25	16	22	1.94
299459--299835	106	3.5	106	87	3	492	35	24	17	22	1.95
300583--300686	37	2.8	36	86	1	136	39	15	14	30	1.87
301248--301358	29	3.6	29	67	17	80	27	6	3	62	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301272--301363	22	4.3	22	67	20	59	26	5	4	64	1.34
301241--301403	65	2.5	65	92	4	260	28	4	3	62	1.33
301454--301478	12	2.1	12	100	0	50	24	0	0	76	0.80
301447--301507	20	3.3	19	84	11	81	22	1	0	75	0.89
302973--303032	22	2.7	21	79	7	66	10	10	16	63	1.51
311762--311800	2	20.5	2	89	10	64	48	0	51	0	1.00
313466--313527	32	1.9	32	83	3	79	19	9	17	53	1.71
322182--322566	48	8.3	48	80	9	442	31	18	22	26	1.97
322208--322568	89	4.0	89	88	6	528	30	19	22	27	1.98
322225--322566	185	1.9	184	93	0	594	31	18	22	27	1.97
323710--323753	17	2.6	17	79	13	63	11	11	2	75	1.15
336936--336976	3	13.7	3	85	10	57	63	2	0	34	1.08

Tables:   1   2

The End!