genome.fa.s7869.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007869.1 Hibiscus syriacus cultivar Beakdansim tig00110243_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  590314

Tables:   1   2   3   

This is table  3  of  3  ( 294 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474054--474171	62	1.9	62	87	6	177	30	0	14	54	1.46
474756--474809	22	2.4	22	81	3	63	22	3	0	74	0.98
478131--478291	37	4.3	38	80	6	170	42	5	5	45	1.50
482415--482870	83	5.3	83	74	11	323	25	17	31	25	1.97
482282--482786	131	3.9	131	89	1	760	26	16	30	26	1.97
482556--483000	214	2.1	214	89	0	676	26	17	30	25	1.97
482376--483524	262	4.4	260	79	8	793	26	17	30	26	1.97
482419--483133	345	2.1	345	89	0	1090	26	17	30	25	1.97
482635--483525	393	2.3	389	83	5	1037	26	17	29	25	1.97
482556--483133	214	2.7	209	81	6	522	26	17	30	25	1.97
482294--483262	476	2.0	476	87	1	1404	26	17	29	26	1.97
482764--483536	131	5.9	130	84	2	972	26	17	29	25	1.98
482770--483536	262	2.9	261	86	1	1070	26	17	29	26	1.98
485925--485969	24	1.9	24	86	4	65	26	6	4	62	1.39
486394--486456	24	2.6	24	97	0	117	34	19	25	20	1.96
504696--504743	23	2.1	23	96	0	87	37	8	16	37	1.79
505364--505809	181	2.5	181	90	1	696	27	15	14	43	1.85
507225--507309	26	3.0	30	83	13	133	35	28	9	27	1.88
508572--509428	199	4.3	199	92	2	1396	27	15	15	41	1.87
508572--509428	405	2.1	397	91	2	1394	27	15	15	41	1.87
510896--512119	198	6.3	199	81	8	1530	27	14	15	41	1.86
511536--512098	199	3.1	178	84	7	655	27	14	15	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510957--512098	375	3.0	376	91	4	1826	27	14	15	41	1.87
522032--522080	19	2.6	19	90	3	73	59	10	0	30	1.31
524251--524306	24	2.5	21	76	20	60	48	8	1	41	1.45
525265--525303	17	2.2	19	86	9	55	41	7	2	48	1.45
525548--525596	19	2.6	20	87	12	77	38	18	0	42	1.50
526565--526603	20	1.9	21	84	5	53	15	15	20	48	1.81
525979--526636	182	3.6	182	87	1	874	26	15	12	44	1.83
526791--526815	11	2.3	11	100	0	50	24	24	20	32	1.98
529241--529291	27	1.9	26	88	4	75	27	15	27	29	1.96
535258--535308	20	2.5	20	93	0	84	25	17	13	43	1.86
535675--535752	27	2.9	27	92	1	122	24	19	28	28	1.98
539858--539890	13	2.5	13	95	0	57	0	9	33	57	1.30
548761--548809	15	3.5	15	72	16	59	40	2	10	46	1.49
548759--548831	27	2.7	27	97	0	137	43	4	9	42	1.56
548852--548903	12	4.1	12	75	22	52	61	1	0	36	1.07
550053--550113	21	3.0	21	80	2	70	9	22	34	32	1.87
550145--550190	3	15.3	3	95	0	83	67	2	0	30	1.03
550423--550503	4	20.2	4	84	0	63	0	64	0	35	0.94
550441--550532	4	23.8	4	80	10	93	0	67	0	32	0.91
554344--554395	25	2.1	25	88	0	77	44	7	13	34	1.72
572182--572237	26	2.2	26	87	9	80	75	1	16	7	1.11
572191--572244	26	2.0	26	85	7	72	74	1	16	7	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573368--574078	48	15.6	48	79	10	801	27	22	18	31	1.97
573372--574078	89	7.8	89	89	4	1065	27	22	18	31	1.97
573368--574078	274	2.6	274	94	0	1271	27	22	18	31	1.97
583827--584103	5	55.6	5	68	22	117	54	4	2	38	1.33
583826--584103	45	6.4	44	71	22	150	54	4	2	38	1.33
583845--584168	7	42.9	7	68	23	121	52	5	2	39	1.38
583883--584134	17	15.8	17	71	23	67	51	5	2	40	1.39
583816--584124	124	2.4	130	77	18	294	53	5	1	39	1.35
589622--589665	2	22.0	2	100	0	88	50	0	0	50	1.00
589665--589693	2	14.5	2	100	0	58	0	0	48	51	1.00

Tables:   1   2   3

The End!