Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007877.1 Hibiscus syriacus cultivar Beakdansim tig00110253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  614694

Tables:   1   2   3   4   

This is table  4  of  4  ( 420 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
534354--534391
20
1.9
20
94
0
67
55
0
15
28
1.41
534545--534606
2
31.0
2
78
12
65
51
1
3
43
1.27
534594--534652
22
2.6
22
73
26
61
59
0
6
33
1.24
534597--534693
21
4.5
21
87
11
117
55
1
8
35
1.37
534617--535115
14
34.4
15
65
26
124
51
1
9
37
1.43
534548--534741
6
30.5
6
72
18
76
54
1
6
37
1.35
534588--534838
92
2.8
92
81
12
256
54
1
8
35
1.38
534771--534818
13
3.8
12
89
8
69
52
2
8
37
1.44
534765--534824
25
2.3
27
85
11
88
51
1
10
36
1.45
534647--534894
21
11.7
21
71
16
115
52
1
10
36
1.43
534677--534911
85
2.8
84
75
17
234
51
0
10
37
1.42
534834--534947
55
2.1
54
85
11
153
50
0
10
38
1.43
534900--534973
21
3.6
21
81
15
68
52
2
6
37
1.42
534994--535115
22
5.8
21
76
15
103
51
0
7
40
1.36
534709--535103
147
2.7
144
75
14
369
51
1
9
37
1.43
534994--535115
8
16.2
8
68
25
63
51
0
7
40
1.36
535308--535407
36
2.7
36
85
3
119
40
12
16
32
1.84
535888--535925
20
1.9
20
88
0
58
26
7
2
63
1.35
535872--535955
37
2.3
37
78
12
93
22
8
1
67
1.24
540569--540616
17
2.9
16
90
3
69
83
6
8
2
0.88
540566--540633
24
3.0
23
78
4
66
79
7
11
1
0.99
541226--541302
22
3.5
22
94
0
136
38
27
12
20
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
541494--541556
24
2.6
24
76
2
72
38
17
3
41
1.65
542129--543177
106
10.0
106
89
3
1592
33
24
18
23
1.97
543880--543981
36
2.8
36
98
1
195
41
11
16
30
1.84
543876--544012
36
3.8
36
88
1
166
39
13
15
32
1.86
548126--548234
43
2.4
46
83
6
134
40
9
20
30
1.83
548126--548250
47
2.8
44
83
7
153
40
8
22
29
1.82
549985--550015
6
5.2
6
92
0
53
16
19
35
29
1.93
551094--551149
13
4.3
13
89
10
80
78
0
16
5
0.92
551093--551149
27
2.2
26
85
14
82
78
0
15
5
0.91
551122--551219
17
5.8
17
71
19
71
74
2
18
5
1.10
551134--551192
21
2.7
22
77
15
68
74
3
20
1
1.05
551120--551203
34
2.5
33
84
9
107
75
2
19
3
1.07
551090--551197
13
8.7
12
74
14
62
75
1
18
3
1.03
551090--551164
13
6.2
12
82
11
73
77
1
17
4
0.99
551107--551216
50
2.2
48
82
9
125
74
1
19
4
1.08
566070--566175
3
34.7
3
80
7
115
39
0
0
59
1.04
566695--566732
19
2.0
19
85
10
51
42
26
18
13
1.87
578875--578932
16
3.6
16
82
17
75
86
0
13
0
0.58
578875--578940
13
5.1
13
77
18
66
84
0
15
0
0.61
578875--578940
19
3.3
20
85
8
91
84
0
15
0
0.61
580083--580555
83
5.7
83
95
0
829
25
13
23
36
1.92
581388--582405
113
8.8
113
86
4
1236
37
13
19
29
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
581425--582405
233
4.3
231
90
3
1373
37
13
19
29
1.90
582687--582784
3
31.7
3
77
10
90
40
1
0
58
1.05
582687--582774
34
2.6
34
80
10
108
39
1
0
59
1.05
587123--587149
14
1.9
14
100
0
54
62
0
0
37
0.95
587145--587283
76
1.9
72
85
7
190
47
5
6
40
1.53
587145--587408
36
7.2
36
69
16
161
46
4
6
42
1.51
587275--587378
37
2.9
36
69
16
92
45
3
4
46
1.42
590031--590085
19
2.9
19
97
0
101
21
40
16
21
1.91
595913--595993
24
3.6
22
77
14
85
23
25
22
28
1.99
595892--595993
44
2.3
44
78
8
109
26
25
20
27
1.99
597913--597961
18
2.8
17
79
14
55
12
0
24
63
1.29
602009--602191
95
1.9
94
91
3
296
33
18
19
28
1.95
603370--603931
84
6.8
84
81
3
618
31
25
20
23
1.98
604627--604769
40
3.8
36
76
13
94
48
5
7
38
1.55
611213--611377
89
1.8
90
84
7
228
36
7
13
42
1.72
611486--611700
94
2.3
95
91
0
342
36
8
13
41
1.75

Tables:   1   2   3   4

The End!