genome.fa.s7878.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007878.1 Hibiscus syriacus cultivar Beakdansim tig00110254_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  246905

Tables:   1   2   

This is table  1  of  2  ( 145 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13947--13991	21	2.1	21	95	0	81	51	2	33	13	1.53
22631--22692	30	2.0	30	84	6	79	24	4	11	59	1.51
24166--24503	161	2.1	162	88	1	491	40	13	17	29	1.87
24480--24526	20	2.4	19	82	10	67	53	10	17	19	1.72
24491--24531	20	2.2	19	83	12	50	51	14	17	17	1.77
26751--26833	21	4.0	21	95	0	139	42	10	28	18	1.84
26870--26935	33	2.0	33	90	0	105	28	0	48	22	1.51
28715--28763	19	2.6	19	96	0	89	32	2	10	55	1.45
28898--29619	200	3.6	200	91	0	1140	36	14	17	31	1.90
31096--31171	6	12.7	6	74	0	62	38	11	32	17	1.86
31101--31167	12	5.6	12	87	7	100	35	13	34	16	1.88
31096--31171	12	6.3	12	85	0	98	38	11	32	17	1.86
31096--31192	12	7.8	13	78	12	80	38	10	31	19	1.85
31109--31189	24	3.4	24	81	6	92	37	11	32	19	1.87
32402--33894	184	8.1	184	95	0	2565	36	14	16	33	1.89
36710--36782	23	3.2	23	90	0	110	35	5	20	38	1.76
37137--37181	22	2.0	22	83	8	56	42	11	8	37	1.72
37199--37271	23	3.2	23	92	0	119	34	5	21	38	1.77
36367--38160	489	3.7	489	95	0	3186	41	7	10	40	1.67
37688--37760	23	3.2	23	86	0	101	36	5	19	38	1.75
38234--38281	23	2.1	23	92	0	78	33	16	12	37	1.86
40693--40728	19	1.9	19	94	5	65	47	11	22	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41817--41848	13	2.4	14	94	5	57	0	15	34	50	1.45
42241--42278	6	6.2	6	85	14	51	39	0	0	60	0.97
53400--53470	36	2.0	36	94	0	124	59	0	14	26	1.36
53561--53601	11	3.3	12	86	13	57	48	0	4	46	1.23
55946--55988	16	2.7	16	88	0	68	32	2	30	34	1.71
56058--56375	134	2.4	130	84	5	424	49	12	14	23	1.78
56343--56407	29	2.2	29	76	10	69	49	3	16	30	1.61
57379--57416	20	1.9	19	94	5	67	36	10	28	23	1.88
68537--68566	2	15.0	2	100	0	60	50	0	0	50	1.00
70275--70330	3	19.0	3	92	3	96	66	0	0	33	0.92
70586--70955	42	8.6	42	74	12	340	31	21	20	26	1.98
71066--71103	12	3.2	12	92	0	67	18	7	34	39	1.80
71767--71826	22	2.7	22	92	5	95	36	13	15	35	1.86
72188--72325	55	2.5	54	88	4	206	28	18	13	39	1.88
72423--74168	580	3.0	582	98	0	3379	30	21	15	32	1.94
75389--75527	72	1.9	72	91	2	226	33	19	21	25	1.97
77650--77689	6	5.9	7	83	16	57	55	12	17	15	1.70
80184--80235	13	4.1	12	74	13	50	13	9	9	67	1.42
81746--81793	3	16.0	3	78	8	53	62	0	0	37	0.95
83580--83653	23	3.2	24	75	9	73	51	14	9	24	1.72
87687--87719	2	16.5	2	93	0	57	51	3	0	45	1.16
87719--87756	14	2.7	15	84	12	53	68	2	5	23	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88169--88237	34	2.0	34	97	0	129	33	13	11	42	1.80
88785--89779	105	9.5	105	89	2	1401	23	17	25	33	1.96
88785--89779	211	4.7	209	90	1	1408	23	17	25	33	1.96
90928--90963	18	2.0	18	94	0	63	41	33	5	19	1.75
91377--91431	22	2.5	22	96	0	101	25	12	25	36	1.91
92063--92142	16	5.1	15	76	18	65	2	11	7	78	1.04
95530--95558	5	5.8	5	100	0	58	82	0	0	17	0.66
97244--97289	2	24.0	2	91	8	78	50	0	0	50	1.00
97727--97795	34	2.0	34	94	0	120	31	14	11	42	1.82
105156--105198	21	2.0	21	82	8	52	39	11	4	44	1.62
107229--107265	6	6.2	6	100	0	74	48	0	51	0	1.00
111940--112051	34	3.3	34	89	3	163	41	13	14	30	1.84
112364--112415	20	2.6	20	93	0	95	36	19	13	30	1.90
118294--118379	20	4.2	20	86	5	118	24	23	15	37	1.93
118305--118386	42	2.0	42	90	0	128	24	21	15	37	1.93
118859--118895	4	9.8	4	82	11	51	29	0	18	51	1.47
118857--118889	10	3.5	10	84	16	52	30	0	18	51	1.46
121595--121648	21	2.6	21	96	0	99	33	12	22	31	1.92
123437--123494	27	2.1	27	93	0	98	10	22	34	32	1.88
123649--123731	29	2.8	30	77	12	82	42	37	4	15	1.69
123750--123788	19	2.1	19	100	0	78	35	20	38	5	1.75
127252--127333	23	3.7	22	78	6	85	28	21	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131150--131189	21	1.9	21	90	10	64	30	10	7	52	1.62
141214--141258	3	15.0	3	90	0	63	28	35	4	31	1.77
143104--143159	28	2.0	30	82	10	73	64	3	0	32	1.11
143280--143331	13	3.8	13	71	14	50	71	1	0	26	0.97
143279--143349	29	2.4	30	92	4	117	69	4	0	26	1.07
143275--143329	21	2.7	19	79	17	58	72	1	0	25	0.94
143443--143483	5	8.2	5	86	0	55	21	0	56	21	1.43
143756--143835	35	2.5	31	79	15	97	20	17	31	31	1.95
144190--144237	20	2.3	21	79	17	55	37	2	2	58	1.22
145155--145180	6	4.3	6	100	0	52	19	0	34	46	1.50
145512--145597	38	2.2	38	87	6	120	16	13	33	36	1.88
150380--150410	15	2.1	15	93	0	53	54	0	0	45	0.99
154881--154966	38	2.3	38	81	2	111	45	5	10	38	1.63
154869--155039	88	2.0	87	84	10	224	45	4	10	39	1.59
154903--155023	51	2.4	50	79	5	127	43	5	13	37	1.68
155005--155062	22	2.5	23	80	5	64	44	5	8	41	1.57
154969--155124	60	2.6	58	84	10	179	44	4	8	41	1.56
155078--155134	22	2.5	23	75	18	64	43	1	5	49	1.35
155169--155242	9	9.2	8	72	24	50	35	0	1	63	1.03
155191--155242	16	3.1	18	74	25	60	30	0	0	69	0.89
155194--155252	14	4.3	14	83	8	68	30	0	0	69	0.89
155191--155253	32	2.0	32	84	12	85	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156412--156441	15	1.9	16	93	6	53	23	3	0	73	0.98
157441--157509	36	1.9	35	82	8	86	37	8	31	21	1.84
158226--158281	22	2.5	22	97	0	103	37	12	23	26	1.90
159009--159099	23	4.0	23	91	0	137	27	17	25	29	1.97
161887--161959	24	3.0	24	88	4	103	35	26	15	23	1.94
165356--165390	18	1.9	18	94	0	61	54	14	22	8	1.67
167319--167710	54	7.3	54	89	5	596	25	18	21	34	1.95
171028--171109	21	3.8	21	78	3	92	37	28	14	19	1.91
171151--171209	21	2.8	20	80	10	64	33	13	20	32	1.91
175414--175568	21	7.3	21	73	5	114	38	23	14	23	1.91
175403--175535	65	2.0	65	85	0	176	39	23	13	23	1.90
175477--175568	42	2.2	42	88	0	130	38	23	14	23	1.92
178177--178385	37	5.8	36	77	13	157	43	6	12	37	1.68
178290--178316	13	2.1	13	100	0	54	44	7	7	40	1.60
178232--178386	73	2.1	73	89	2	231	43	5	12	38	1.67
178384--178424	2	20.5	2	100	0	82	51	48	0	0	1.00
178467--178523	22	2.5	24	85	11	91	47	0	5	47	1.24
178491--178556	29	2.2	29	86	5	87	42	0	9	48	1.35
178556--178643	5	18.2	5	79	16	89	36	0	0	63	0.95
178544--178630	13	6.4	14	83	11	110	37	0	2	59	1.10
178544--178632	2	49.0	2	70	22	54	38	0	2	59	1.10
178559--178644	40	2.2	40	87	8	122	36	0	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178558--178646	4	20.8	4	76	14	56	35	0	0	64	0.94
179765--179822	16	3.7	16	75	17	59	27	1	1	68	1.08
179765--179821	29	2.0	29	82	3	71	28	1	1	68	1.09
183436--183492	25	2.3	24	80	13	71	52	5	0	42	1.24
185624--185746	64	1.9	63	82	9	151	28	4	8	58	1.47
193840--193931	44	2.0	48	85	12	131	52	5	2	40	1.37
194369--194412	22	2.0	22	81	0	52	43	0	6	50	1.29
194461--194528	30	2.2	30	87	7	93	52	4	2	39	1.36
194571--194603	16	2.1	16	100	0	66	51	12	0	36	1.39
194611--194679	34	2.0	34	100	0	138	17	5	31	44	1.72

Tables:   1   2