Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007878.1 Hibiscus syriacus cultivar Beakdansim tig00110254_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  246905

Tables:   1   2   

This is table  2  of  2  ( 145 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
194802--194855
21
2.6
21
100
0
108
12
51
5
29
1.63
195658--195705
21
2.2
21
85
10
62
66
0
4
29
1.10
195715--195803
5
17.8
5
95
0
70
22
11
16
49
1.77
195721--195794
10
7.4
10
95
0
112
20
13
20
45
1.84
195721--195794
15
4.9
15
93
0
112
20
13
20
45
1.84
195903--196210
5
61.6
5
89
0
238
15
8
23
52
1.70
195965--196201
10
23.7
10
86
0
267
18
10
21
49
1.77
198371--198399
14
2.0
15
93
6
51
62
0
37
0
0.96
198487--198559
37
2.0
37
100
0
146
28
8
21
41
1.82
199031--199089
22
2.8
22
85
10
79
25
18
30
25
1.98
200621--200672
18
2.9
18
88
5
79
19
23
30
26
1.98
210855--210932
24
3.2
24
64
10
61
52
15
8
23
1.70
211957--212153
55
3.6
55
91
3
317
31
18
21
28
1.97
218719--218793
20
3.8
20
100
0
150
24
16
33
26
1.95
218759--218940
55
3.3
55
90
0
285
29
17
23
29
1.97
219299--219348
21
2.4
21
82
0
55
40
8
24
28
1.83
219503--219582
23
3.6
22
80
14
85
22
23
23
30
1.99
220960--221051
23
4.0
23
89
0
130
28
25
25
21
1.99
222678--222732
22
2.7
20
77
5
56
29
20
10
40
1.86
223038--223081
20
2.1
21
83
4
54
45
29
2
22
1.65
224579--224623
2
22.5
2
100
0
90
51
0
0
48
1.00
226898--227398
54
9.3
55
86
5
693
28
26
14
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
226898--227391
107
4.6
108
87
6
682
28
26
14
29
1.95
226902--227398
267
1.8
269
88
5
763
28
26
14
29
1.95
231831--231858
8
3.5
8
100
0
56
50
10
0
39
1.37

Tables:   1   2

The End!