genome.fa.s7880.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007880.1 Hibiscus syriacus cultivar Beakdansim tig00110258_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1382630

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29317--29378	30	2.1	30	90	0	97	35	17	4	41	1.71
47287--47345	15	3.9	15	80	8	57	0	22	44	33	1.53
48192--48743	102	5.3	101	83	5	597	29	5	42	22	1.77
49168--49294	54	2.4	54	93	0	209	19	5	48	26	1.71
51663--51827	82	2.0	83	97	1	314	42	19	18	20	1.90
52510--52598	39	2.3	39	86	1	117	57	8	8	24	1.58
58001--58039	18	2.2	18	100	0	78	15	0	15	69	1.20
58007--58049	18	2.3	18	84	8	50	18	2	20	58	1.50
63626--63679	21	2.6	21	90	0	81	35	27	25	11	1.90
71254--71324	27	2.6	27	80	8	74	25	7	19	47	1.74
73520--73659	30	4.7	30	84	7	140	33	13	23	29	1.93
76513--76548	4	9.0	4	100	0	72	25	0	25	50	1.50
84348--84390	20	2.2	20	86	0	59	30	13	20	34	1.92
84500--84580	37	2.2	37	100	0	162	37	14	32	16	1.89
85930--85968	20	2.0	20	89	0	60	23	35	2	38	1.68
88917--88946	15	1.9	16	93	6	53	23	0	50	26	1.50
91889--91980	20	4.5	21	72	6	73	29	25	19	26	1.99
91888--91981	40	2.3	40	80	12	102	30	24	19	25	1.98
93226--93283	2	29.0	2	100	0	116	50	0	0	50	1.00
93456--93613	21	7.8	20	72	7	86	38	25	17	18	1.92
93580--93772	20	9.6	20	81	6	212	35	25	19	19	1.95
93580--93772	60	3.2	59	82	4	244	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94155--94224	33	2.2	32	89	2	104	11	22	18	47	1.81
94304--94413	21	5.8	20	74	17	108	45	18	24	11	1.83
94297--94413	41	3.1	38	81	14	145	46	17	25	11	1.81
94364--94420	14	3.7	14	75	20	60	43	22	24	8	1.81
94356--94436	33	2.5	33	95	0	144	46	22	22	8	1.78
94432--94529	19	5.7	19	73	22	99	10	22	22	44	1.82
94454--94543	14	5.7	14	69	23	63	8	23	23	44	1.81
94437--94551	33	3.5	33	95	0	212	9	22	20	46	1.79
96247--96614	185	2.0	186	98	0	720	21	13	18	46	1.83
96247--96621	93	4.1	93	97	1	718	22	12	18	46	1.83
96669--96797	19	7.3	19	75	17	125	45	28	17	8	1.77
96705--96797	33	2.8	32	91	4	150	46	27	18	7	1.76
96669--96797	52	2.5	52	74	14	140	45	28	17	8	1.77
96793--96857	19	3.7	19	78	19	86	12	21	20	46	1.83
96815--96871	14	3.7	14	77	20	60	10	21	22	45	1.82
96798--96890	33	2.8	33	91	0	150	9	19	23	47	1.79
96862--96908	20	2.4	20	89	3	69	10	14	29	44	1.79
98833--98868	14	2.6	14	95	0	63	33	0	22	44	1.53
98975--99091	19	6.4	19	85	10	163	44	17	22	15	1.86
98975--99091	33	3.2	36	82	13	141	44	17	22	15	1.86
98994--99110	53	2.2	53	98	1	227	44	17	23	13	1.85
99100--99306	19	11.7	19	80	16	257	14	23	17	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99123--99287	33	4.8	33	75	16	174	13	23	17	46	1.83
99106--99320	52	4.1	52	98	1	414	13	23	17	45	1.84
99066--99284	104	2.1	105	82	3	271	18	22	19	39	1.93
99175--99320	33	4.2	33	74	19	138	13	23	17	45	1.83
101598--101622	12	2.1	12	100	0	50	0	28	0	72	0.86
101797--101842	23	2.0	23	86	4	65	39	21	13	26	1.90
102524--102773	20	12.5	20	86	1	250	19	18	25	37	1.94
102760--102842	21	4.0	21	73	6	78	25	16	24	33	1.96
102740--102838	42	2.4	43	77	11	100	21	18	23	37	1.94
105983--106211	116	2.0	116	82	7	286	54	4	14	27	1.59
112602--113051	222	2.0	223	93	0	767	30	13	25	31	1.93
114762--114902	36	3.9	36	86	0	192	27	36	4	31	1.78
114764--114902	72	1.9	72	89	0	215	28	35	5	30	1.79
115298--115323	5	5.2	5	100	0	52	80	0	19	0	0.71
115519--115570	16	3.3	15	77	17	52	15	17	0	67	1.24
118876--119016	36	3.9	36	89	0	210	27	37	4	29	1.78
119625--119676	16	3.3	15	77	17	52	15	17	0	67	1.24
122977--123117	36	3.9	36	87	0	201	27	36	4	30	1.78
126666--126702	19	1.9	19	94	0	65	24	5	32	37	1.78
127806--127996	36	5.3	36	92	0	292	31	24	26	17	1.97
131705--131770	27	2.7	23	72	17	60	31	21	21	25	1.98
131706--131756	27	1.9	26	88	4	75	33	23	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137997--138039	13	3.3	13	93	0	77	16	46	20	16	1.84
137980--138020	18	2.3	18	100	0	82	17	51	17	14	1.77
140552--140646	24	4.0	24	84	0	118	18	14	17	48	1.81
140575--140644	12	5.8	12	81	6	79	14	15	18	51	1.77
140538--140646	48	2.3	48	85	3	139	18	16	17	47	1.83
142788--142845	13	4.3	13	88	4	80	15	43	22	18	1.88
142806--142852	8	6.5	8	77	22	59	14	38	25	21	1.92
142766--142811	18	2.6	18	100	0	92	17	52	17	13	1.75
142822--142853	7	4.4	7	92	7	55	12	34	28	25	1.92
142806--142852	15	3.3	15	91	5	71	14	38	25	21	1.92
145371--145430	12	5.0	12	82	8	77	15	16	18	50	1.79
145334--145430	48	2.0	48	84	4	124	18	17	17	46	1.85
145351--145442	48	1.9	48	86	0	130	19	15	16	48	1.81
145334--145442	24	4.5	24	79	2	112	19	16	16	47	1.83
146754--146800	24	1.9	24	91	4	76	48	2	12	36	1.53
147647--147725	35	2.3	35	84	4	97	40	15	13	30	1.86
148593--148617	4	6.2	4	100	0	50	76	0	0	24	0.80
148960--149035	29	2.5	31	75	10	86	52	5	2	39	1.38
149054--149131	33	2.3	34	88	6	131	38	15	7	38	1.76
150315--150400	31	2.8	31	76	11	88	37	16	24	22	1.93
151047--151075	14	2.1	14	93	6	51	62	17	13	6	1.52
152363--152387	6	4.2	6	100	0	50	20	16	32	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153556--153612	29	2.0	29	100	0	114	17	22	17	42	1.89
160479--160520	15	2.8	15	82	10	50	71	4	2	21	1.16
160487--160520	16	2.2	15	89	5	50	73	5	0	20	1.04
163999--164069	31	2.5	26	76	20	88	29	15	16	38	1.90
164008--164069	31	2.0	31	96	0	115	29	14	19	37	1.91
166162--166242	27	3.1	26	77	13	87	39	20	4	34	1.75
174544--174568	10	2.5	10	100	0	50	36	0	8	56	1.29
176764--176811	13	3.5	13	72	10	51	47	10	4	37	1.57
176755--176827	28	2.6	28	97	0	137	46	10	8	34	1.69
187722--187769	24	2.0	25	83	4	62	41	10	0	47	1.37
187721--187775	24	2.2	25	77	6	58	38	9	3	49	1.52
193467--193550	33	2.5	34	96	1	152	41	1	0	57	1.06
193839--193875	2	18.5	2	100	0	74	48	0	0	51	1.00
202638--202680	22	2.1	20	87	12	61	46	0	2	51	1.13
213714--213749	18	2.0	18	100	0	72	38	22	5	33	1.77
213900--214004	51	2.1	51	100	0	210	43	14	13	28	1.83
218264--218340	35	2.2	35	82	11	97	50	0	1	48	1.09
218288--218337	22	2.3	22	79	6	57	54	0	2	44	1.11
219952--220009	26	2.1	29	84	12	77	31	1	3	63	1.21
221077--221144	31	2.2	31	83	0	82	52	8	10	27	1.65
222775--222814	18	2.2	18	100	0	80	37	22	20	20	1.94
244447--244499	21	2.6	20	80	11	54	16	11	1	69	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264416--265048	228	2.8	227	92	0	1025	30	15	23	30	1.95
275803--275839	18	2.1	18	89	0	56	2	13	0	83	0.74
278205--278323	42	2.8	42	77	0	103	38	21	17	22	1.93
278253--278338	42	2.0	42	81	0	100	36	18	24	20	1.95
279063--279225	45	3.6	45	94	0	263	30	18	31	19	1.96
279039--279226	90	2.1	90	87	3	279	31	17	31	19	1.95
283340--283392	23	2.3	23	96	0	97	33	16	3	45	1.66
286930--286978	21	2.4	20	86	6	71	55	2	0	42	1.11
290717--290858	71	2.0	71	95	0	257	43	12	13	30	1.81
294481--294568	23	3.8	23	77	4	97	20	17	7	54	1.67

Tables:   1   2   3   4   5