genome.fa.s7882.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007882.1 Hibiscus syriacus cultivar Beakdansim tig00110260_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1274288

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 577 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
856200--856229	4	7.5	4	100	0	60	23	0	0	76	0.78
865411--865507	39	2.5	39	96	0	176	40	14	7	38	1.74
865554--865631	40	2.0	40	86	0	111	44	11	6	37	1.66
865603--865967	58	6.4	57	72	18	194	40	13	6	38	1.71
865821--865919	50	2.0	49	88	2	144	39	12	9	39	1.74
865766--865994	58	4.1	58	77	14	194	40	14	8	36	1.77
866150--866366	45	4.8	45	82	3	231	36	14	11	36	1.83
873054--873687	55	11.7	52	83	9	706	27	27	14	29	1.95
873054--873687	108	5.9	107	91	3	918	27	27	14	29	1.95
873054--873687	163	3.9	163	89	3	958	27	27	14	29	1.95
874465--874869	128	3.2	127	89	3	573	22	27	15	35	1.94
876111--876140	16	1.9	16	93	6	53	13	20	0	66	1.24
876110--876203	6	15.2	6	69	21	52	8	18	0	73	1.08
885377--885417	13	3.2	13	89	0	64	34	19	19	26	1.96
885296--885480	100	1.9	100	80	2	219	30	20	20	29	1.97
888534--888580	25	2.0	25	91	8	80	72	4	10	12	1.25
894397--894472	32	2.4	31	78	6	73	39	13	13	34	1.83
895573--895672	36	2.8	36	84	7	114	70	1	5	24	1.14
903233--903279	24	2.0	23	87	4	67	34	10	21	34	1.88
914520--914608	26	3.4	26	96	1	160	24	20	40	14	1.90
921506--921603	21	4.8	20	76	10	83	37	22	19	20	1.94
921571--921763	20	9.6	20	82	7	194	34	27	19	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
921571--921764	40	4.8	39	85	5	228	35	27	19	18	1.95
921571--921763	60	3.2	60	84	5	255	34	27	19	18	1.95
922143--922213	33	2.2	33	92	0	115	11	22	16	49	1.78
922293--922402	21	5.8	20	74	17	108	45	18	24	11	1.83
922286--922402	41	3.1	38	81	14	145	46	17	25	11	1.81
922353--922409	14	3.7	14	75	20	60	43	22	24	8	1.81
922345--922425	33	2.5	33	95	0	144	46	22	22	8	1.78
922421--922548	19	7.1	19	71	19	87	10	25	18	45	1.82
922443--922499	14	3.7	14	75	20	60	8	24	22	43	1.81
922426--922548	33	3.5	33	88	10	165	10	24	18	46	1.81
922484--922548	21	3.1	21	82	4	96	10	26	15	47	1.78
924233--924608	93	4.1	93	96	0	700	22	12	19	45	1.83
924688--924765	19	4.4	19	79	15	94	47	26	17	7	1.75
924656--924765	52	2.1	53	86	1	150	46	26	18	9	1.78
924723--924749	14	1.9	14	100	0	54	48	29	14	7	1.71
924761--924933	19	9.6	19	76	12	150	10	20	23	45	1.82
924783--924839	14	3.7	14	75	20	51	10	22	22	43	1.84
924766--924858	33	2.8	33	95	0	168	10	21	21	46	1.81
924766--924933	33	4.7	38	81	7	158	10	19	23	46	1.81
926860--926895	14	2.6	14	95	0	63	33	0	22	44	1.53
927002--927099	19	5.4	19	84	13	143	45	17	22	14	1.84
927002--927118	53	2.2	53	98	1	227	44	17	23	13	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927108--927330	19	12.7	19	74	19	207	15	22	17	44	1.86
927114--927277	33	4.8	33	71	19	138	15	23	16	45	1.85
927108--927330	53	4.2	52	93	1	349	15	22	17	44	1.86
927165--927344	86	2.1	84	84	12	224	14	22	17	46	1.84
927146--927344	33	5.7	34	73	17	167	14	22	17	45	1.84
927145--927363	53	4.2	53	85	5	191	14	21	18	45	1.85
929629--929653	12	2.1	12	100	0	50	0	28	0	72	0.86
929828--929874	24	2.0	24	87	8	69	38	21	14	25	1.92
930567--930795	20	11.4	20	88	1	262	19	18	25	36	1.94
930789--930838	21	2.4	20	80	9	55	26	18	20	36	1.95
936677--936735	29	2.0	29	100	0	118	49	13	13	23	1.78
941370--941455	29	3.0	29	98	0	163	46	13	15	24	1.82
941627--941664	19	2.0	19	89	0	58	36	5	7	50	1.54
942615--942663	23	2.1	23	88	7	73	51	18	14	16	1.77
946624--946661	19	2.0	19	94	0	67	23	7	10	57	1.58
950859--950902	23	1.9	23	100	0	88	40	9	9	40	1.68
950843--951086	87	2.8	86	85	3	310	45	7	9	36	1.66
951020--951069	23	2.2	23	85	0	64	38	6	16	40	1.73
951032--951079	23	2.1	23	84	0	60	37	4	16	41	1.68
951451--951517	23	2.9	23	86	0	89	34	14	8	41	1.78
951459--951533	23	3.3	23	82	0	69	34	13	10	41	1.79
952115--952158	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954602--954678	37	2.1	37	85	4	102	48	1	3	46	1.28
958315--958356	17	2.4	18	84	4	59	57	2	2	38	1.25
958359--958447	25	3.3	27	72	20	80	49	0	5	44	1.25
958374--958436	25	2.6	26	82	12	89	47	0	7	44	1.32
958963--959002	20	2.0	21	90	5	64	32	0	17	50	1.47
959455--959495	19	2.2	19	86	0	55	56	2	0	41	1.13
974704--974752	19	2.6	19	87	6	64	46	12	26	14	1.79
975485--975541	25	2.3	25	100	0	114	31	14	24	29	1.94
980481--980562	3	27.7	3	85	7	51	41	0	0	58	0.98
981274--981324	26	2.0	26	84	0	66	11	23	52	11	1.70
981484--981513	14	2.1	14	93	0	51	13	10	36	40	1.78
982473--982513	12	3.5	12	83	3	57	26	2	2	68	1.15
982451--982513	11	5.8	11	73	17	51	26	4	1	66	1.20
992211--992292	41	2.0	40	83	9	103	53	0	0	46	1.00
992247--992292	15	2.9	16	78	15	51	52	0	0	47	1.00
993037--993106	2	35.0	2	100	0	140	50	0	0	50	1.00
995791--995829	17	2.3	17	86	0	51	43	5	7	43	1.55
997850--997999	65	2.3	66	82	6	182	28	21	18	31	1.97
1001879--1001976	41	2.4	41	96	0	178	32	20	10	36	1.86
1009361--1009466	44	2.5	44	81	9	128	42	1	0	54	1.17
1009406--1009460	11	5.1	11	75	16	53	36	0	0	63	0.95
1009387--1009466	22	3.7	21	69	12	54	41	2	0	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009483--1009523	18	2.3	18	84	12	50	70	2	0	26	0.99
1010770--1010799	16	1.9	15	93	6	51	56	0	3	40	1.16
1011967--1011996	2	15.0	2	100	0	60	50	0	0	50	1.00
1012227--1012302	2	38.0	2	100	0	152	50	0	0	50	1.00
1013388--1013427	15	2.5	15	88	12	53	30	27	12	30	1.93
1018163--1018204	17	2.4	18	92	4	68	30	26	11	30	1.92
1026886--1026964	36	2.2	36	97	0	149	44	8	15	31	1.77
1028255--1028318	31	2.0	31	85	14	87	57	6	1	34	1.33
1028834--1028874	16	2.4	18	76	12	50	73	7	7	12	1.25
1028893--1028938	19	2.4	19	85	0	65	63	10	8	17	1.51
1029345--1029387	17	2.4	18	76	11	52	58	2	6	32	1.38
1030410--1030467	24	2.5	23	75	8	55	63	5	3	27	1.31
1031502--1031553	2	26.5	2	88	3	79	50	3	0	46	1.20
1031938--1032774	105	8.0	105	88	2	1177	22	18	25	32	1.97
1044351--1044461	50	2.2	50	81	10	120	54	4	3	36	1.38
1044442--1044475	15	2.2	16	94	5	61	70	0	0	29	0.87
1044444--1044482	3	14.3	3	80	20	50	71	0	0	28	0.86
1044444--1044482	5	7.2	6	86	13	50	71	0	0	28	0.86
1045477--1045508	2	16.5	2	93	6	57	50	0	0	50	1.00
1046838--1046904	6	11.2	6	96	0	107	29	49	16	4	1.65
1046902--1046950	5	9.8	5	93	0	62	16	36	40	6	1.73
1052803--1052881	6	13.2	6	97	0	122	29	49	16	5	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052879--1052937	5	11.8	5	94	0	64	13	37	40	8	1.75
1054184--1054254	36	2.0	36	91	0	115	26	21	23	28	1.99
1054296--1054472	44	4.1	44	81	3	171	33	11	22	32	1.90
1058869--1058896	14	2.0	14	100	0	56	35	28	14	21	1.92
1063072--1063165	41	2.3	41	83	0	107	36	21	20	22	1.95
1063483--1063521	18	2.2	18	85	0	51	53	17	0	28	1.44
1064426--1064470	22	2.0	22	86	0	63	35	13	8	42	1.75
1068489--1068549	23	2.7	23	89	0	86	59	4	31	4	1.40
1069033--1069069	19	1.9	19	88	0	56	40	8	16	35	1.78
1073868--1073906	21	2.0	20	85	10	53	38	0	5	56	1.22

Tables:   1   2   3   4   5