genome.fa.s7882.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007882.1 Hibiscus syriacus cultivar Beakdansim tig00110260_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1274288

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 577 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1075136--1075199	27	2.4	27	91	0	101	29	9	26	34	1.88
1079911--1079968	20	2.9	19	87	5	71	31	8	24	36	1.85
1082013--1082047	18	2.0	17	94	5	61	45	5	0	48	1.26
1082247--1082356	42	2.6	42	95	0	193	39	8	11	40	1.72
1082471--1082509	14	2.8	13	82	14	51	48	33	2	15	1.58
1082475--1082557	21	4.0	20	72	9	58	43	28	2	25	1.67
1084362--1084692	102	3.3	102	90	2	542	21	10	18	49	1.76
1086370--1086412	21	2.0	21	81	0	50	18	9	4	67	1.36
1087821--1087867	14	3.7	14	71	26	50	51	4	0	44	1.21
1087819--1087868	23	2.1	24	96	3	93	48	4	0	48	1.20
1088133--1088176	16	2.8	16	85	0	61	47	9	20	22	1.78
1092741--1092766	13	2.0	13	100	0	52	38	0	7	53	1.30
1097073--1097112	21	1.9	21	94	0	71	32	30	15	22	1.94
1097138--1097176	19	2.1	19	90	0	60	23	35	15	25	1.94
1097093--1097302	64	3.3	63	79	11	187	30	24	15	28	1.96
1097254--1097302	19	2.6	19	87	9	66	24	28	18	28	1.98
1105384--1105413	15	2.0	15	100	0	60	33	6	20	40	1.78
1105736--1105775	21	1.9	21	94	0	71	32	30	15	22	1.94
1105801--1105839	19	2.1	19	95	0	69	20	38	15	25	1.92
1105736--1105945	64	3.2	63	80	7	199	32	26	15	26	1.95
1105886--1105990	45	2.3	45	100	0	210	28	27	16	27	1.97
1105962--1106010	19	2.6	19	84	9	57	24	30	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1106722--1106749	10	2.8	10	100	0	56	32	28	28	10	1.90
1112457--1112481	10	2.5	10	100	0	50	76	0	8	16	1.02
1112642--1112671	15	2.0	15	93	0	51	40	10	10	40	1.72
1113763--1113852	45	2.0	44	95	2	162	40	7	24	27	1.83
1117795--1117843	19	2.5	19	87	9	64	71	0	6	22	1.08
1118499--1118716	76	2.9	76	93	1	366	58	13	0	27	1.42
1118590--1118704	25	4.6	24	66	17	72	58	14	0	26	1.43
1118579--1118704	44	3.1	44	66	29	134	57	14	0	26	1.42
1120649--1120722	5	14.8	5	69	10	53	70	2	5	21	1.20
1123340--1123382	17	2.5	17	88	0	59	72	0	9	18	1.11
1124050--1124220	73	2.3	73	90	5	258	58	11	1	29	1.40
1124126--1124170	23	2.0	23	82	8	56	60	13	2	24	1.45
1124050--1124247	73	2.7	73	87	7	255	61	10	1	27	1.35
1128076--1128142	24	2.8	24	72	16	68	29	2	2	64	1.23
1128170--1128210	21	2.0	21	85	9	57	24	0	2	73	0.96
1131139--1131298	78	2.0	79	98	1	313	35	20	13	31	1.90
1135999--1136063	31	2.1	31	88	0	94	30	29	16	23	1.96
1139383--1139594	102	2.1	103	96	0	390	25	14	24	35	1.93
1139608--1139675	22	3.0	23	84	4	93	20	27	25	26	1.99
1140009--1140041	12	2.5	13	90	9	50	30	3	27	39	1.72
1144682--1144894	103	2.1	103	95	0	381	26	13	23	36	1.92
1145308--1145360	16	3.2	16	72	5	52	30	1	26	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1149983--1150192	103	2.0	103	95	0	375	26	14	23	35	1.93
1150222--1150279	23	2.5	23	88	0	80	22	24	22	31	1.99
1150609--1150661	16	3.2	16	72	5	52	30	1	26	41	1.66
1165388--1165485	30	3.3	30	89	0	133	32	21	20	25	1.97
1165512--1165562	27	1.9	26	88	4	75	27	19	23	29	1.98
1168094--1168168	37	2.0	37	82	10	91	49	4	1	45	1.29
1173857--1173893	2	18.5	2	100	0	74	51	0	0	48	1.00
1180108--1180146	19	2.1	19	85	9	53	33	2	2	61	1.23
1181163--1181205	16	2.7	16	96	0	77	23	2	30	44	1.66
1181880--1181904	7	3.6	7	100	0	50	32	12	0	56	1.36
1187872--1187900	12	2.4	12	100	0	58	0	41	31	27	1.56
1189519--1189558	21	1.9	21	89	0	62	10	25	40	25	1.86
1197738--1197767	13	2.2	14	94	5	53	40	0	13	46	1.43
1200072--1200121	23	2.3	23	82	6	68	20	22	40	18	1.92
1208990--1209027	18	2.2	18	95	4	69	65	2	0	31	1.06
1209066--1209115	10	5.0	10	85	0	64	42	0	30	28	1.56
1212448--1212577	30	4.3	30	100	0	260	33	6	6	54	1.50
1212448--1212556	15	7.3	15	61	0	56	33	5	5	55	1.46
1212470--1212580	15	7.4	15	62	0	60	34	7	5	53	1.52
1212448--1212606	60	2.7	60	92	3	232	34	5	6	53	1.50
1212737--1212787	26	1.9	27	84	4	68	29	5	1	62	1.29
1215405--1215457	21	2.5	21	93	0	88	30	32	20	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1215469--1215671	21	9.8	21	80	13	215	20	20	26	32	1.97
1215453--1215540	42	2.1	41	93	4	151	20	21	23	34	1.97
1215467--1215668	103	2.0	102	89	3	307	19	19	26	33	1.96
1216547--1216602	21	2.7	19	76	15	58	33	21	21	23	1.97
1227637--1227668	16	2.0	16	93	0	55	65	0	6	28	1.16
1229184--1229263	40	2.0	40	85	2	106	35	17	10	37	1.83
1235117--1235159	19	2.2	20	84	12	54	30	0	2	67	1.03
1235476--1235510	16	2.2	16	90	5	54	20	2	2	74	1.08
1238552--1238599	7	6.6	7	86	9	69	85	10	4	0	0.73
1238543--1238599	21	2.6	21	86	8	69	82	10	7	0	0.84
1238559--1238606	14	3.3	14	81	16	53	83	8	8	0	0.82
1242560--1242585	11	2.4	11	100	0	52	92	7	0	0	0.39
1243407--1244177	105	7.4	105	95	0	1379	33	24	17	23	1.96
1245891--1245932	18	2.2	20	87	8	61	28	0	2	69	1.01
1245958--1245996	2	19.5	2	100	0	78	48	0	0	51	1.00
1246522--1246577	2	28.0	2	100	0	112	50	0	0	50	1.00
1247331--1247386	18	2.8	19	79	15	60	55	0	0	44	0.99
1254769--1254825	28	2.0	28	83	12	73	64	3	26	5	1.30
1255879--1255929	23	2.2	23	100	0	102	45	13	11	29	1.79
1256533--1256565	17	1.9	17	100	0	66	30	9	24	36	1.86
1256533--1256569	17	2.3	16	90	9	58	29	8	27	35	1.85
1260990--1261030	8	5.2	8	82	5	57	34	0	29	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1261101--1261728	128	4.9	128	94	1	1012	23	24	20	32	1.98
1262129--1262229	34	3.0	34	85	0	139	38	1	3	55	1.30
1262747--1262840	21	4.5	21	89	5	136	21	26	34	18	1.96
1262747--1262864	42	2.8	42	82	7	141	22	23	33	19	1.97
1262844--1262891	21	2.3	21	85	0	60	22	12	39	25	1.89
1264610--1264686	31	2.4	32	85	10	95	61	1	0	37	1.05
1264611--1264692	32	2.4	33	78	19	80	59	2	0	37	1.11
1266402--1266453	16	3.2	16	100	0	104	11	36	19	32	1.87
1271883--1271932	15	3.3	15	100	0	100	14	24	34	28	1.93

Tables:   1   2   3   4   5

The End!