genome.fa.s7898.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007898.1 Hibiscus syriacus cultivar Beakdansim tig00110287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  546391

Tables:   1   2   

This is table  2  of  2  ( 234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274194--274349	29	5.5	29	79	7	115	51	9	5	33	1.58
274241--274349	28	3.9	28	79	6	123	48	11	5	34	1.62
274338--274407	28	2.5	28	88	6	97	48	14	2	34	1.58
276160--276197	9	3.7	10	86	13	51	39	0	0	60	0.97
276160--276197	19	1.9	20	89	10	60	39	0	0	60	0.97
276160--276209	19	2.4	21	80	12	59	40	2	2	56	1.22
276241--276290	9	5.4	9	81	13	66	34	4	0	62	1.14
276241--276292	19	2.8	20	85	11	74	34	3	0	61	1.14
276678--276744	30	2.2	30	86	0	89	41	1	2	53	1.25
276696--276789	30	3.3	30	78	15	92	45	0	1	53	1.07
278880--278972	29	3.2	29	69	22	79	32	20	1	46	1.58
278848--279026	60	3.0	58	79	15	188	29	20	2	47	1.64
281152--281202	26	2.0	26	84	7	68	39	1	3	54	1.30
281342--281395	28	1.9	28	85	7	74	44	5	3	46	1.44
291187--291225	19	2.2	18	86	9	53	69	15	10	5	1.34
296052--296137	41	2.1	41	97	0	163	26	18	15	39	1.90
301064--301151	33	2.6	33	79	12	90	37	3	40	18	1.67
304518--304567	23	2.2	24	89	7	77	56	0	2	42	1.11
314529--314664	60	2.3	60	83	3	159	35	19	14	30	1.92
314875--314954	12	6.7	12	79	2	90	20	15	20	45	1.86
314878--314945	24	2.8	24	93	0	118	20	11	19	48	1.80
315892--315927	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317408--317460	25	2.1	25	100	0	106	45	3	16	33	1.66
321762--321827	24	2.8	23	90	6	105	16	16	18	48	1.82
324981--325141	50	3.2	50	89	1	234	20	11	19	48	1.79
325009--325143	23	5.5	23	68	14	74	21	10	19	48	1.78
324982--325118	27	5.4	27	70	13	92	20	10	18	49	1.77
325059--325180	23	5.1	23	73	8	91	24	12	18	45	1.83
324981--325180	50	4.1	48	85	4	145	23	12	18	46	1.82
326109--326160	25	2.1	25	96	0	95	44	15	7	32	1.75
328758--328966	73	2.8	73	83	7	255	33	13	5	46	1.68
328745--328998	73	3.5	70	76	12	210	35	13	6	44	1.69
329139--329715	188	3.1	182	82	5	640	33	15	11	39	1.83
331002--331031	2	15.0	2	100	0	60	50	0	0	50	1.00
331016--331092	25	3.0	25	73	17	68	40	0	1	58	1.06
334766--334801	16	2.2	16	90	5	54	63	2	0	33	1.08
337079--337120	22	2.0	21	86	9	59	50	16	9	23	1.75
339810--339847	11	3.5	11	96	0	67	60	0	13	26	1.33
342698--342764	8	8.4	8	75	11	57	67	4	0	28	1.10
342698--342761	30	2.0	33	82	8	80	67	4	0	28	1.11
342794--342836	21	2.1	21	82	4	52	60	0	6	32	1.23
343332--343358	2	13.5	2	100	0	54	48	0	0	51	1.00
343458--343496	15	2.6	15	84	8	53	46	0	2	51	1.14
343459--343510	23	2.2	24	83	12	65	42	0	1	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344115--344180	14	4.5	15	81	11	75	42	0	0	57	0.98
365285--365590	153	2.0	153	97	1	578	34	21	13	30	1.92
368560--368742	56	3.2	56	75	10	174	39	25	12	22	1.89
368485--368760	56	4.9	55	69	10	150	38	23	12	25	1.90
374161--374241	33	2.5	33	91	4	128	37	19	14	28	1.92
374284--374308	11	2.3	11	100	0	50	52	12	8	28	1.66
374789--374838	16	3.4	15	86	13	77	28	0	2	70	0.99
374789--374838	3	16.0	3	77	22	50	28	0	2	70	0.99
374797--374838	21	2.0	21	90	9	68	26	0	2	71	0.98
375354--375382	2	15.0	2	92	7	51	48	0	0	51	1.00
376341--376401	29	2.1	28	96	3	113	31	47	11	9	1.72
381492--381549	23	2.5	23	82	0	71	46	17	20	15	1.84
381795--381850	22	2.5	22	82	8	60	50	1	3	44	1.29
381861--381916	26	2.1	27	86	3	78	46	5	1	46	1.36
382872--382971	50	2.1	45	87	9	137	55	13	8	24	1.64
386197--386286	31	2.9	31	93	0	153	30	21	17	31	1.96
390823--390862	21	1.9	21	84	0	53	40	15	2	42	1.60
391911--391996	42	2.1	40	86	4	118	43	6	2	47	1.43
407005--407035	2	15.5	2	100	0	62	51	0	0	48	1.00
407104--407152	24	2.0	24	100	0	98	28	14	8	48	1.72
411246--411338	10	9.7	9	78	13	87	16	26	27	29	1.97
411246--411338	19	4.8	20	79	15	104	16	26	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411246--411338	29	3.2	28	87	6	123	16	26	27	29	1.97
411266--411344	9	8.3	9	78	12	52	16	29	29	25	1.97
411341--411420	5	14.8	5	77	14	79	18	51	22	7	1.71
411341--411427	22	4.0	22	100	0	174	18	49	22	9	1.76
411341--411420	17	4.9	15	78	14	79	18	51	22	7	1.71
418599--418691	10	9.7	9	78	13	87	16	26	27	29	1.97
418599--418691	19	4.8	20	79	15	104	16	26	27	29	1.97
418599--418691	29	3.2	28	87	6	123	16	26	27	29	1.97
418619--418697	9	8.3	9	78	12	52	16	29	29	25	1.97
418694--418773	5	14.8	5	77	14	79	18	51	22	7	1.71
418694--418780	22	4.0	22	100	0	174	18	49	22	9	1.76
418694--418773	17	4.9	15	78	14	79	18	51	22	7	1.71
428489--428525	19	1.9	19	94	0	65	54	0	13	32	1.40
429302--429534	40	5.7	40	75	6	200	30	16	18	35	1.92
429375--429635	42	6.3	42	73	6	156	28	19	18	33	1.95
429287--429652	164	2.2	164	83	0	455	29	18	18	33	1.95
431075--431144	31	2.4	29	86	9	90	44	8	17	30	1.78
432326--432466	43	3.3	42	83	3	183	22	21	23	32	1.98
432559--432619	20	3.0	20	97	0	113	47	19	19	13	1.82
432904--432961	2	29.0	2	100	0	116	50	0	0	50	1.00
437465--437515	24	2.3	22	78	15	59	31	1	7	58	1.37
438432--438456	5	5.0	5	100	0	50	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447956--448025	20	3.5	20	76	7	70	40	12	10	37	1.77
448242--448313	35	2.1	35	94	0	126	40	23	6	29	1.81
453916--453992	37	2.1	37	82	4	93	46	1	3	48	1.28
455900--455935	2	18.0	2	100	0	72	50	0	0	50	1.00
459407--459488	36	2.3	36	81	8	112	31	8	20	39	1.83
468534--468576	22	2.0	22	86	4	61	60	9	9	20	1.55
475157--475416	81	3.1	78	68	23	206	41	3	4	51	1.38
475158--475442	88	3.3	85	73	19	295	42	3	3	50	1.36
475137--475465	169	2.0	168	91	0	541	42	3	3	49	1.38
475413--475457	23	2.0	23	81	0	54	51	4	4	40	1.42
481659--481717	22	2.7	23	84	10	79	59	1	1	37	1.18
483377--483450	24	3.1	24	76	7	87	52	16	12	18	1.74
483377--483468	48	1.9	48	84	8	125	52	15	11	20	1.74
483377--483481	48	2.2	48	81	10	117	50	15	13	20	1.77
485155--485197	20	2.2	20	100	0	86	32	30	4	32	1.78
488811--488884	12	6.2	12	78	6	78	16	16	17	50	1.79
488776--488884	24	4.5	24	80	6	123	19	15	15	49	1.80
490872--490921	26	1.9	26	91	0	82	42	8	8	42	1.63
491170--491201	2	16.0	2	100	0	64	50	0	0	50	1.00
492147--492196	15	3.3	15	80	5	57	48	6	0	46	1.27
492256--492435	67	2.6	67	80	6	191	36	15	21	26	1.93
494466--494598	43	3.1	42	77	10	137	24	15	8	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496352--496415	26	2.5	26	94	0	110	37	20	4	37	1.74
507759--507783	5	5.0	5	100	0	50	0	0	60	40	0.97
509089--509114	2	13.0	2	100	0	52	50	0	0	50	1.00
540951--541030	38	2.1	39	92	2	135	28	31	13	26	1.94

Tables:   1   2

The End!