genome.fa.s7902.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007902.1 Hibiscus syriacus cultivar Beakdansim tig00110293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  611524

Tables:   1   2   3   

This is table  3  of  3  ( 300 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516746--516789	12	3.7	12	78	9	54	65	2	0	31	1.05
516746--516795	12	4.2	12	75	17	50	64	4	0	32	1.12
520232--520278	24	2.0	24	87	8	69	38	21	14	25	1.92
520960--521169	20	10.5	20	84	5	228	20	18	25	36	1.95
521156--521253	21	4.8	20	75	15	83	23	17	21	37	1.94
521176--521258	21	4.0	21	75	6	87	26	16	22	33	1.96
521156--521254	42	2.4	43	80	8	116	23	17	22	37	1.94
526685--526762	36	2.1	36	92	2	129	35	17	23	23	1.95
529830--529868	17	2.3	17	100	0	78	25	7	25	41	1.82
534411--534568	21	7.8	20	72	7	86	38	25	17	18	1.92
534535--534804	40	6.8	40	89	2	319	38	24	17	20	1.93
534535--534804	20	13.5	20	80	7	253	38	24	17	20	1.93
534535--534804	60	4.5	60	85	1	301	38	24	17	20	1.93
535487--535533	24	2.0	24	87	8	69	25	14	21	38	1.92
538031--538101	33	2.2	33	84	0	88	19	21	21	38	1.94
538063--538140	19	4.4	19	79	15	103	14	20	17	47	1.82
538044--538122	33	2.4	33	97	0	149	12	22	18	45	1.84
538199--538360	33	4.8	32	74	17	139	45	17	22	15	1.85
538199--538366	19	9.6	19	75	18	168	44	17	22	16	1.87
538199--538366	52	3.2	52	94	0	291	44	17	22	16	1.87
538373--538472	19	5.5	19	84	12	147	15	23	17	45	1.85
538356--538472	53	2.2	53	95	1	209	14	24	17	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538579--538615	14	2.6	14	91	0	65	45	21	0	32	1.52
540577--540669	33	2.8	33	91	0	159	47	20	20	11	1.81
540596--540652	14	3.7	14	72	20	51	45	21	21	12	1.83
540540--540674	19	7.6	19	75	16	119	45	22	19	11	1.83
540670--540798	19	7.3	19	75	17	125	8	17	28	45	1.77
540670--540761	33	2.8	33	93	3	150	7	18	28	45	1.76
540842--541126	93	3.1	93	95	1	522	46	18	12	23	1.82
542833--542903	14	4.7	14	83	16	97	40	23	26	8	1.83
542828--542894	33	2.0	33	94	0	116	43	20	26	8	1.82
542937--542990	14	3.5	14	73	22	54	7	25	24	42	1.80
542921--543001	33	2.5	33	93	0	135	7	23	22	46	1.76
542977--543054	41	1.9	41	94	0	138	11	26	16	44	1.82
542978--543053	21	3.7	21	82	3	100	10	26	17	46	1.80
543133--543203	33	2.2	33	89	0	106	47	16	23	11	1.79
543584--543777	20	9.6	20	82	5	221	19	19	25	35	1.95
543584--543777	60	3.2	60	83	0	253	19	19	25	35	1.95
543795--543877	21	4.0	21	73	6	78	25	16	24	33	1.96
547706--547736	14	2.2	14	94	0	53	41	0	3	54	1.16
554796--554835	19	2.1	19	95	0	71	45	0	2	52	1.14
554883--554918	13	2.8	13	82	0	54	47	0	2	50	1.15
555067--555135	23	3.0	23	75	8	77	34	0	24	40	1.56
556068--556093	12	2.2	12	100	0	52	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562383--562407	10	2.5	10	100	0	50	28	0	0	72	0.86
569518--569543	2	13.0	2	100	0	52	50	0	0	50	1.00
569671--569804	66	2.0	65	81	7	155	25	12	19	42	1.86
569929--569956	3	9.3	3	100	0	56	67	0	0	32	0.91
571099--571131	16	2.0	17	88	5	50	75	3	9	12	1.14
571212--571264	26	2.1	25	92	3	88	73	3	0	22	0.99
573382--573406	3	8.3	3	100	0	50	68	0	0	32	0.90
578179--578211	12	2.5	14	85	14	52	33	9	0	57	1.30
585154--585231	37	2.1	37	92	2	131	20	12	19	47	1.82
603534--603590	29	2.0	29	100	0	114	24	7	17	50	1.70
609062--609095	14	2.5	14	90	4	52	20	47	17	14	1.83
609038--609085	18	2.6	19	90	6	80	22	50	14	12	1.77
609044--609123	32	2.6	31	86	4	99	18	45	18	17	1.86
609110--609150	8	5.4	8	88	11	68	14	34	26	24	1.94
609113--609150	7	5.1	7	90	9	58	13	34	26	26	1.93
609113--609150	15	2.5	15	100	0	76	13	34	26	26	1.93

Tables:   1   2   3

The End!