genome.fa.s7907.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007907.1 Hibiscus syriacus cultivar Beakdansim tig00110301_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135996

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794--820	2	13.5	2	100	0	54	48	0	0	51	1.00
18368--18427	21	2.7	23	71	21	65	45	0	0	55	0.99
21724--21774	19	2.6	19	75	9	50	49	1	0	49	1.12
21931--22032	34	2.9	36	89	5	163	44	13	13	28	1.82
21929--22066	37	3.8	37	84	4	156	42	12	13	31	1.81
22393--22461	33	2.1	32	84	10	86	23	10	7	59	1.54
22414--22490	35	2.3	33	81	4	82	28	3	7	59	1.43
22559--22596	20	1.9	20	88	0	58	26	7	2	63	1.35
22607--22641	16	2.1	18	89	10	56	25	8	0	65	1.21
25830--25898	16	4.6	16	76	20	53	78	8	13	0	0.97
25835--25882	24	2.0	24	84	8	62	79	8	12	0	0.94
25836--25915	25	3.1	25	77	13	72	77	7	15	0	0.98
25868--25914	16	2.8	17	84	9	53	74	8	17	0	1.05
26566--26614	22	2.2	22	92	0	80	32	24	14	28	1.94
27030--27065	18	2.0	18	88	0	54	19	8	30	41	1.81
27545--27826	36	8.0	36	79	8	303	25	19	14	40	1.90
27503--27826	72	4.6	72	75	11	221	26	19	15	38	1.91
27601--27789	102	1.9	102	88	2	290	26	19	13	40	1.89
27565--27889	138	2.4	137	83	2	427	27	20	12	39	1.89
28601--29533	105	9.0	105	92	2	1427	34	26	17	22	1.96
30079--30180	34	2.9	36	89	5	163	44	13	13	28	1.82
30077--30214	37	3.8	37	84	4	156	42	12	13	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30542--30610	33	2.1	32	84	10	86	23	10	7	59	1.54
30563--30641	35	2.3	33	82	4	86	29	3	7	59	1.43
30757--30791	16	2.1	18	89	10	56	25	8	0	65	1.21
30887--30925	16	2.4	16	83	8	53	23	7	0	69	1.14
32711--32795	27	3.1	27	71	19	70	52	0	3	43	1.18
32700--32795	22	3.8	26	77	16	87	52	0	3	44	1.17
32739--32810	24	2.9	25	77	10	67	51	0	4	44	1.20
33042--33100	30	2.0	30	93	0	100	55	10	8	25	1.61
33613--33652	20	2.0	20	90	5	62	40	32	15	12	1.84
33621--33662	19	2.2	20	86	4	59	45	33	14	7	1.72
35467--35570	44	2.3	44	83	9	122	34	23	20	22	1.97
37539--37724	63	3.0	63	89	2	277	31	19	18	30	1.96
37539--37694	31	4.9	33	78	15	193	33	18	18	29	1.95
37540--37727	31	6.0	31	76	6	173	30	19	19	30	1.96
40269--40405	23	6.0	23	90	0	193	18	26	25	29	1.98
40575--40677	53	1.9	53	98	0	197	32	5	28	33	1.81
43182--43221	20	2.0	20	85	5	53	40	30	15	15	1.87
52631--52671	21	2.0	21	85	0	55	29	29	24	17	1.97
52698--52735	20	1.9	20	88	0	58	23	34	31	10	1.89
53345--53407	23	2.7	23	85	4	83	22	26	25	25	2.00
59474--59532	20	2.9	21	92	2	93	23	32	33	10	1.88
60152--60195	18	2.4	19	84	3	54	18	6	4	70	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75456--75495	18	2.2	19	86	4	55	20	7	5	67	1.34
78139--78221	23	3.6	23	91	0	130	20	28	25	25	1.99
84351--84478	64	2.0	67	84	10	176	34	20	18	26	1.96
85055--85123	23	3.0	23	79	8	86	21	26	24	27	1.99
88427--88478	25	2.1	25	100	0	104	17	7	11	63	1.50
89650--89736	46	1.9	45	92	2	147	40	2	11	45	1.53
94705--94740	18	1.9	19	88	5	56	58	5	0	36	1.22
103791--103873	29	2.8	29	92	1	139	43	9	14	32	1.78
108557--108639	29	2.8	29	92	1	139	43	9	14	32	1.78
111421--111576	59	2.6	58	79	7	143	40	3	19	36	1.70
111421--111533	60	1.9	59	82	8	140	38	3	23	35	1.72
112914--112952	19	2.1	19	90	0	60	66	5	7	20	1.36
113784--113829	20	2.2	20	84	7	56	67	0	2	30	1.03
113818--113861	19	2.3	19	85	14	56	45	6	2	45	1.42
114168--114200	13	2.4	14	95	5	59	75	6	0	18	1.00
114268--114316	19	2.4	21	86	13	84	61	0	8	30	1.25
115083--115528	229	2.0	224	92	4	752	45	8	7	39	1.62
115594--115639	20	2.3	19	89	10	74	54	10	17	17	1.70
118106--118171	33	2.0	33	90	0	105	28	0	48	22	1.51
119959--120006	18	2.6	19	86	6	71	31	2	10	56	1.45
120123--121285	197	5.9	199	96	2	2121	37	15	15	31	1.90
122720--122781	18	3.4	18	79	0	79	37	9	35	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122720--122811	6	15.3	6	79	0	67	36	7	34	20	1.81
122735--122815	3	27.0	3	75	0	72	35	6	34	23	1.80
122723--122799	36	2.1	36	90	0	118	35	9	35	20	1.85
122723--122811	12	7.4	12	84	0	88	35	7	34	21	1.82
122720--122811	18	5.1	18	77	0	76	36	7	34	20	1.81
124270--124966	179	3.9	184	93	4	1190	36	14	16	33	1.88
127411--127475	25	2.6	25	80	0	85	35	9	13	41	1.77
127756--127817	21	2.8	23	80	7	74	35	6	20	37	1.79
127778--127826	23	2.1	23	88	7	73	34	2	20	42	1.64
127762--127831	21	3.2	21	75	15	61	32	5	21	40	1.77
128089--128139	25	2.0	25	92	0	84	33	7	19	39	1.81
128429--128465	18	2.1	18	89	0	56	32	5	10	51	1.60
128421--128467	24	2.0	24	86	0	67	34	4	14	46	1.64
128720--128806	39	2.2	39	95	0	156	48	20	13	17	1.81
129142--129199	22	2.7	23	78	10	68	43	10	10	36	1.73
129232--129277	22	2.1	21	84	11	58	34	2	21	41	1.66
131963--131993	6	5.2	6	92	0	53	32	12	19	35	1.90
132073--132120	21	2.3	21	85	0	60	25	25	22	27	2.00
133783--133807	9	2.8	9	100	0	50	12	0	44	44	1.41
135403--135439	17	2.2	17	100	0	74	18	43	27	10	1.83

Tables:   1

The End!