genome.fa.s7914.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007914.1 Hibiscus syriacus cultivar Beakdansim tig00110317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  500553

Tables:   1   2   

This is table  2  of  2  ( 228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262169--262227	31	1.9	31	85	0	82	45	3	3	47	1.36
263812--263852	18	2.3	18	91	4	66	29	4	0	65	1.13
265516--265557	18	2.3	18	79	0	57	28	28	19	23	1.98
265897--265925	3	9.7	3	100	0	58	34	31	34	0	1.58
267278--267320	18	2.4	18	88	0	59	20	32	4	41	1.73
267288--267322	18	1.9	18	100	0	70	17	37	5	40	1.73
267661--267702	17	2.6	16	85	7	57	42	21	0	35	1.53
270067--270106	22	1.9	21	85	10	55	50	17	0	32	1.47
270337--270428	23	4.0	23	82	0	94	32	26	22	18	1.97
271844--271888	21	2.1	21	84	8	56	17	24	26	31	1.97
273971--274065	41	2.3	41	92	0	154	20	29	28	22	1.98
275993--276043	18	2.9	17	83	11	59	29	29	3	37	1.75
279707--279747	14	2.9	14	85	0	64	48	21	2	26	1.63
289731--289773	21	2.0	21	100	0	86	9	27	4	58	1.49
292694--292775	30	2.7	30	75	7	94	31	12	10	45	1.76
294058--294103	22	2.1	21	84	11	58	54	13	2	30	1.50
299931--299992	23	2.9	21	85	4	79	20	33	24	20	1.97
304323--304407	33	2.6	32	88	5	134	11	10	36	41	1.76
304567--304653	38	2.3	38	94	5	151	11	11	39	37	1.78
304113--304647	238	2.2	236	85	8	713	23	11	27	37	1.90
305230--305276	18	2.8	17	87	6	69	31	25	6	36	1.81
315376--315881	253	2.0	253	99	0	1003	25	12	25	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322361--322405	20	2.2	20	84	7	56	73	0	24	2	0.95
335362--335415	24	2.3	23	78	12	56	57	0	5	37	1.22
336160--336203	22	2.0	22	90	0	70	52	11	4	31	1.57
341300--341379	31	2.5	32	90	6	119	20	20	22	37	1.94
345906--345950	22	2.0	22	87	8	65	37	4	2	55	1.32
348515--348577	30	2.1	31	84	3	83	44	4	6	44	1.50
349147--350400	4	314.5	4	98	0	2417	49	24	0	25	1.52
350765--350841	38	2.0	38	94	0	136	28	29	16	24	1.97
350766--350830	18	3.5	18	83	8	94	29	30	15	24	1.96
351282--351327	19	2.3	20	92	7	85	30	21	4	43	1.72
352172--352226	24	2.5	24	82	11	73	25	23	18	32	1.97
356065--356160	18	5.0	20	72	7	74	26	27	20	26	1.99
357122--357148	2	13.5	2	100	0	54	48	0	0	51	1.00
358903--358949	21	2.2	22	85	11	62	44	8	0	46	1.33
358933--359008	31	2.5	30	76	6	80	44	6	5	43	1.52
360292--360363	36	2.0	36	94	0	126	29	13	16	40	1.87
360300--360358	19	3.2	19	72	18	70	32	11	15	40	1.83
360453--360557	36	2.9	36	98	0	201	27	10	26	35	1.89
362722--362766	22	2.0	22	86	0	63	37	11	11	40	1.76
363122--363194	23	3.2	23	90	0	92	39	19	4	36	1.71
363622--363684	23	2.7	23	90	0	99	36	20	4	38	1.74
363702--363746	22	2.0	22	86	0	63	40	11	8	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364090--364162	23	3.2	23	88	7	112	36	21	6	34	1.81
362662--365112	479	5.1	479	95	1	4287	39	11	7	41	1.69
364569--364641	23	3.2	23	92	0	119	38	21	5	34	1.77
362662--365112	968	2.5	962	95	2	4333	39	11	7	41	1.69
365048--365113	23	2.9	23	90	0	105	37	19	6	36	1.77
365182--365748	199	2.8	200	95	0	992	30	18	14	36	1.90
365986--366030	19	2.4	19	92	0	72	55	6	4	33	1.46
367810--367875	33	2.0	33	90	0	105	22	48	0	28	1.51
367909--367973	21	3.1	21	90	0	94	18	29	10	41	1.84
370369--370415	20	2.4	19	82	10	67	21	17	8	53	1.70
370156--370627	180	2.6	179	91	1	719	27	17	13	41	1.87
372731--372755	2	12.5	2	100	0	50	48	0	0	52	1.00
380656--380680	13	1.9	13	100	0	50	20	16	16	48	1.82
383046--383087	21	2.0	21	95	0	75	30	14	7	47	1.71
383082--383180	33	3.0	32	91	4	153	33	7	14	45	1.71
384303--384336	18	1.9	18	88	5	52	41	11	8	38	1.73
384284--384340	15	3.7	15	75	9	60	36	12	8	42	1.74
397029--397089	23	2.9	19	81	11	59	21	36	26	16	1.94
403979--404023	13	3.5	13	81	0	54	68	13	2	15	1.30
404168--404192	3	8.3	3	100	0	50	0	64	0	36	0.94
407288--407312	12	2.1	12	100	0	50	24	0	0	76	0.80
407973--408008	14	2.6	14	90	0	63	16	8	13	61	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419953--420012	20	3.1	19	73	17	52	68	1	11	18	1.28
420005--420135	11	10.9	12	67	20	51	70	3	3	23	1.16
420194--420222	2	15.0	2	92	7	51	51	0	0	48	1.00
420631--420671	11	3.6	11	87	6	55	65	4	4	24	1.32
420754--420798	12	3.7	12	81	3	54	66	0	4	28	1.11
421351--421455	37	2.8	37	86	0	147	31	14	14	40	1.86
422186--423666	106	14.0	105	90	2	2127	23	18	24	33	1.96
424491--424546	22	2.5	22	94	0	103	26	12	25	35	1.91
425148--425180	16	2.1	16	100	0	66	6	12	6	75	1.16
425151--425187	15	2.4	16	90	4	58	5	13	8	72	1.24
425177--425227	8	7.0	7	80	10	50	0	15	5	78	0.93
425182--425228	23	2.0	24	87	4	69	0	19	4	76	0.95
430040--430079	2	20.0	2	100	0	80	50	0	0	50	1.00
430234--430258	2	12.5	2	100	0	50	52	0	0	48	1.00
430465--430505	11	3.6	11	87	6	55	65	4	4	24	1.32
430585--430624	12	3.3	12	82	0	53	65	0	5	30	1.14
431182--431286	37	2.8	37	83	0	138	32	14	13	40	1.84
434004--434041	19	2.0	19	89	0	58	26	5	2	65	1.27
436177--436261	42	2.0	42	100	0	170	51	9	11	27	1.69
443634--443706	2	36.5	2	100	0	146	49	0	0	50	1.00
445428--445467	20	2.0	20	85	0	53	22	12	20	45	1.84
445617--446074	219	2.1	223	90	5	714	29	12	17	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446435--446487	18	3.0	17	86	8	70	28	30	7	33	1.85
450470--450524	22	2.5	22	100	0	110	34	3	9	52	1.50
451980--452019	13	2.9	15	82	17	50	42	12	2	42	1.56
453634--453705	18	3.8	18	76	16	74	20	12	34	31	1.90
453634--453710	39	2.0	39	84	5	102	23	12	32	31	1.92
454099--454139	21	2.0	21	85	9	57	53	0	17	29	1.44
458754--458795	21	2.0	21	85	0	57	33	16	23	26	1.96
462912--462962	24	2.1	24	96	0	93	19	17	27	35	1.94
463710--463872	65	2.5	65	80	4	195	34	19	22	23	1.96
464977--465036	2	30.0	2	96	0	111	50	1	0	48	1.11
465516--465576	23	2.7	23	76	0	68	19	24	24	31	1.98
473143--473189	18	2.5	20	76	20	55	29	23	19	27	1.98
473875--473916	21	2.0	21	90	0	66	33	19	23	23	1.97
477307--477347	21	2.0	21	90	9	66	53	0	19	26	1.45
479672--479762	30	3.0	30	84	9	130	43	7	4	43	1.53
479672--479780	31	3.5	32	75	14	111	44	6	6	43	1.55
489822--489998	87	2.0	87	97	2	338	28	6	15	50	1.68
490830--490886	23	2.5	23	85	0	69	19	14	24	42	1.88
497150--497179	15	2.0	15	100	0	60	40	13	26	20	1.89
497653--497682	15	2.0	15	93	0	51	20	50	16	13	1.78

Tables:   1   2

The End!