genome.fa.s7917.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007917.1 Hibiscus syriacus cultivar Beakdansim tig00110320_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  409361

Tables:   1   2   

This is table  2  of  2  ( 208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196838--196884	17	2.7	18	80	6	60	42	2	0	55	1.12
203881--203911	16	1.9	16	93	0	53	54	6	32	6	1.51
218482--218530	16	3.1	16	90	0	80	8	10	22	59	1.56
222606--222659	27	2.0	27	100	0	108	25	22	11	40	1.87
227731--229086	30	46.3	30	79	6	1070	30	41	9	19	1.82
227791--227861	36	2.0	36	97	0	133	23	46	11	18	1.81
227796--227874	36	2.2	35	84	8	97	30	40	10	18	1.84
227731--228956	88	14.0	90	83	7	1126	30	41	9	18	1.82
227731--229057	58	22.6	60	78	8	909	30	41	9	18	1.82
228662--229110	29	15.3	29	71	10	114	30	40	6	22	1.79
229044--229124	27	2.9	27	73	22	78	25	40	7	25	1.82
231024--231078	20	2.8	20	83	8	69	50	9	21	18	1.74
231259--231351	47	2.0	45	93	6	161	53	4	2	39	1.32
233881--233919	10	3.8	10	83	6	51	28	0	10	61	1.28
235418--235523	53	2.0	53	100	0	212	30	3	33	32	1.76
250701--250731	2	15.5	2	100	0	62	48	0	0	51	1.00
252602--252631	16	1.9	16	93	6	53	46	6	20	26	1.75
252760--252832	35	2.1	35	85	10	96	47	5	0	46	1.25
253517--253804	141	2.0	138	83	6	310	44	11	5	37	1.65
260904--260955	21	2.5	21	81	3	70	21	26	19	32	1.97
260945--261053	21	5.3	20	85	5	103	37	17	22	22	1.94
260984--261053	21	3.3	21	100	0	140	38	15	22	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260945--261114	41	4.1	41	80	6	166	35	21	21	21	1.96
261047--261161	20	5.7	20	78	6	88	33	26	16	23	1.95
260945--261099	83	1.9	82	82	4	195	36	20	21	20	1.95
261044--261181	41	3.4	41	76	2	152	36	24	15	23	1.94
261348--261391	22	2.0	22	95	0	79	20	45	15	18	1.85
261640--261713	20	3.8	20	78	1	78	14	18	18	47	1.83
262377--262431	25	2.2	24	78	15	58	20	9	18	52	1.71
261678--262727	527	2.0	527	99	0	2055	29	16	18	35	1.93
263452--263499	18	2.7	18	93	0	87	27	45	12	14	1.81
264087--264138	19	2.7	19	81	3	59	13	25	23	38	1.91
264503--264593	41	2.2	42	82	2	112	23	41	13	21	1.88
264531--264623	41	2.2	42	80	1	107	23	38	18	19	1.93
266110--266148	20	2.0	20	94	0	69	46	30	10	12	1.75
266151--266218	19	3.8	19	79	14	83	47	16	20	16	1.83
266218--266313	40	2.4	41	80	5	115	19	20	18	40	1.91
266226--266313	20	4.4	20	74	5	88	19	21	20	38	1.93
266527--266576	20	2.5	20	74	6	57	22	16	24	38	1.93
266603--266651	20	2.4	21	86	3	64	20	22	16	40	1.91
267417--267470	24	2.2	24	90	0	81	22	16	20	40	1.91
267645--267669	12	2.1	12	100	0	50	72	0	28	0	0.86
270076--270112	14	2.6	14	91	0	65	45	24	0	29	1.53
271500--271579	42	1.9	42	86	0	115	23	17	37	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271838--271870	17	1.9	17	88	11	50	45	15	15	24	1.84
271801--271985	91	2.0	90	89	6	282	47	18	11	22	1.81
272155--272282	63	2.0	63	96	0	238	22	35	19	21	1.96
273733--273793	20	3.1	19	79	9	68	44	18	24	13	1.85
273758--273854	33	2.9	33	92	1	149	42	22	22	12	1.87
274421--274532	20	5.6	20	84	4	82	21	20	20	37	1.94
274413--274670	41	6.3	41	72	11	154	28	18	19	33	1.95
274441--274594	20	7.5	21	78	5	91	27	19	20	33	1.96
274413--274573	61	2.7	60	75	10	175	27	19	19	33	1.96
274645--274697	21	2.5	22	75	6	65	37	18	22	20	1.94
283368--283436	23	3.0	23	83	8	95	27	26	26	20	1.99
283452--283875	103	4.1	103	98	0	803	36	23	13	26	1.93
285215--285260	21	2.2	21	84	0	56	13	26	30	30	1.93
294243--294486	41	6.0	41	80	5	246	30	24	14	31	1.94
294254--294511	122	2.1	121	89	2	392	30	22	13	32	1.93
296658--296778	41	3.0	41	78	4	109	30	17	13	38	1.88
306519--306553	18	1.9	18	88	0	52	28	17	0	54	1.43
307232--307546	149	2.1	149	98	0	603	35	20	15	27	1.94
308002--308160	63	2.5	63	86	2	212	26	21	19	32	1.97
308128--308165	19	2.0	20	94	5	69	26	28	15	28	1.96
314275--314320	23	2.0	23	91	0	74	28	26	23	21	1.99
314300--314601	149	2.0	149	98	0	577	36	20	14	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315057--315215	63	2.5	63	86	2	212	26	20	18	33	1.96
315183--315220	19	2.0	20	94	5	69	26	28	15	28	1.96
317218--317255	18	2.1	18	100	0	76	10	23	50	15	1.75
319128--319180	21	2.7	18	85	14	61	22	24	35	16	1.95
319154--319204	13	4.2	13	78	14	54	15	21	45	17	1.86
320258--320310	21	2.7	18	85	14	61	26	24	33	15	1.95
320284--320334	13	4.2	13	78	14	54	17	21	45	15	1.86
321851--321960	53	2.0	53	84	8	139	38	10	9	42	1.70
323722--323763	19	2.3	19	84	12	52	54	2	0	42	1.13
324526--324583	19	3.1	19	68	25	50	63	5	0	31	1.16
329323--329401	9	8.3	9	79	10	86	16	26	29	27	1.97
329322--329399	19	4.1	19	90	8	113	17	24	29	28	1.98
329397--329435	17	2.3	17	90	0	60	17	41	23	17	1.91
333509--333594	43	2.0	43	95	0	154	25	12	26	34	1.92
345646--345688	22	2.0	22	81	9	52	37	4	11	46	1.61
363111--363140	2	15.5	2	93	6	53	50	0	0	50	1.00
366529--366573	23	2.0	23	83	12	58	62	6	0	31	1.21
378341--378373	15	2.1	16	94	5	59	12	24	12	51	1.73
379123--379157	16	2.1	17	94	5	63	34	25	8	31	1.86
387801--387882	29	2.8	29	94	1	137	32	14	9	42	1.79
392572--392653	29	2.8	29	94	1	137	32	14	9	42	1.79
403149--403182	2	17.5	2	93	6	61	52	0	0	47	1.00

Tables:   1   2

The End!