genome.fa.s7921.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007921.1 Hibiscus syriacus cultivar Beakdansim tig00110325_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  892961

Tables:   1   2   3   

This is table  3  of  3  ( 345 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580028--580087	21	2.8	21	68	12	50	30	1	16	51	1.54
580381--580440	17	3.6	17	71	8	52	51	5	0	43	1.23
580697--580795	31	3.3	31	81	6	98	43	10	10	36	1.72
580718--580806	28	3.1	27	76	11	79	44	8	8	37	1.67
583694--583727	15	2.3	15	94	0	59	29	17	20	32	1.96
585254--585278	12	2.1	12	100	0	50	52	0	0	48	1.00
594271--594331	2	30.5	2	96	0	113	49	1	0	49	1.10
596817--596944	43	3.0	43	94	2	213	34	9	30	25	1.88
599288--599329	21	2.0	21	85	0	57	52	2	0	45	1.13
603320--603473	65	2.4	65	87	6	199	20	18	27	33	1.96
603349--603479	65	2.0	66	94	4	230	19	18	27	35	1.95
603349--603805	235	2.0	231	90	4	731	21	17	26	35	1.95
603491--603713	64	3.5	65	90	3	328	20	18	26	34	1.95
604168--604285	36	3.3	36	71	11	100	40	16	18	24	1.90
605099--605141	22	2.0	22	95	0	77	23	13	27	34	1.93
605689--605741	23	2.3	23	83	9	72	0	15	7	77	0.98
605705--605736	16	2.0	16	93	0	55	0	9	6	84	0.78
605691--605761	22	3.3	22	77	13	67	0	15	7	77	0.97
605702--605762	30	2.1	29	84	9	79	0	11	6	81	0.85
605710--605764	13	4.0	13	83	7	56	0	12	9	78	0.97
605709--605762	15	3.6	14	79	18	56	0	11	7	81	0.87
607681--607709	5	5.8	5	100	0	58	82	0	0	17	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610173--610226	3	17.7	3	92	3	90	33	0	0	66	0.92
621722--621746	13	1.9	13	100	0	50	60	0	0	40	0.97
624957--625007	21	2.5	20	78	9	57	60	0	0	39	0.97
626634--626696	21	3.0	21	92	0	108	26	19	28	25	1.98
627019--627056	19	2.0	19	100	0	76	31	0	15	52	1.43
627109--627171	22	2.9	22	82	0	81	20	15	17	46	1.85
646367--646402	2	18.5	2	91	5	56	44	0	2	52	1.15
650597--650674	39	2.0	39	97	0	147	47	10	11	30	1.73
653114--653148	10	3.5	10	88	0	52	60	0	0	40	0.97
655079--655109	16	1.9	16	93	0	53	41	12	19	25	1.87
660908--660951	20	2.2	20	84	8	54	61	0	2	36	1.09
668388--668513	59	2.1	59	80	2	137	50	3	12	33	1.56
674574--674645	35	2.1	35	97	0	135	45	5	5	43	1.50
682845--682909	27	2.4	27	97	0	121	40	6	6	47	1.53
682861--682906	13	3.5	13	73	26	51	39	4	6	50	1.48
705364--705419	19	2.9	19	91	0	94	55	0	1	42	1.10
707073--707220	75	2.0	75	84	0	197	40	14	2	42	1.59
719552--719644	14	6.5	14	87	4	141	16	34	13	35	1.88
721323--722201	436	2.0	433	95	4	1566	35	10	13	40	1.79
723956--723991	16	2.2	16	100	0	72	38	0	30	30	1.58
727853--727897	2	22.5	2	100	0	90	51	0	0	48	1.00
729635--729663	2	14.5	2	100	0	58	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734085--734305	111	2.0	109	98	1	424	32	23	22	21	1.98
743913--743939	13	2.1	13	100	0	54	14	7	7	70	1.32
744977--745112	68	2.0	68	94	0	236	24	21	25	28	1.99
746769--746832	33	2.0	31	82	11	76	28	14	7	50	1.70
748532--748579	22	2.1	23	84	3	62	35	4	2	58	1.29
751971--752004	13	2.5	13	90	4	50	79	2	0	17	0.86
760651--760688	18	2.1	19	85	5	51	50	2	7	39	1.46
768967--769011	14	3.4	14	76	17	60	44	4	0	51	1.21
768974--769022	11	4.2	11	78	14	53	48	2	0	48	1.12
768965--769022	25	2.3	25	100	0	116	46	3	0	50	1.18
773270--773311	18	2.3	18	95	0	75	38	40	11	9	1.75
773514--773557	23	2.0	22	82	13	54	40	0	0	59	0.98
775580--775609	10	3.0	10	90	0	51	30	36	0	33	1.58
775646--775679	17	1.9	18	88	5	52	29	0	5	64	1.17
775664--775723	16	3.6	16	70	27	52	21	0	6	71	1.08
777280--777323	10	4.0	11	82	17	56	50	2	0	47	1.13
778032--778096	30	2.1	32	83	11	82	56	0	4	38	1.20
779916--779946	16	1.9	16	93	0	53	51	0	3	45	1.17
780783--780856	37	2.0	37	92	7	125	28	8	24	39	1.84
788840--788866	4	6.8	4	100	0	54	74	0	0	25	0.83
789366--789548	60	3.1	59	75	10	149	38	6	23	32	1.79
801625--801666	19	2.2	19	86	0	57	14	28	0	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
806657--806709	27	2.0	27	85	10	74	58	0	3	37	1.16
819289--819337	24	2.0	24	100	0	98	44	12	8	34	1.71
827949--828170	111	2.0	111	95	0	399	41	18	20	20	1.91
831259--831289	16	1.9	16	100	0	62	51	19	9	19	1.74
840273--840328	26	2.2	26	100	0	112	35	28	7	28	1.84
842823--842981	79	2.0	79	96	0	291	29	23	15	30	1.96
843647--843688	21	2.0	22	82	17	54	14	7	2	76	1.10
843632--843689	26	2.2	26	77	17	66	18	6	1	72	1.16
859423--859464	2	21.5	2	95	4	77	50	0	0	50	1.00
862891--862986	45	2.1	45	98	0	183	17	41	8	32	1.79
864071--864163	21	4.5	21	81	4	109	40	18	23	17	1.90
864071--864199	20	6.3	20	74	9	109	41	18	20	18	1.90
864071--864163	41	2.3	41	98	0	177	40	18	23	17	1.90
864090--864224	41	3.3	41	81	6	132	39	20	20	19	1.93
864152--864246	20	4.7	20	80	2	91	34	24	17	23	1.96
864434--864477	22	2.0	22	90	0	70	20	43	15	20	1.88
864756--864798	20	2.2	20	95	0	77	9	18	18	53	1.70
866117--866160	18	2.4	18	88	0	70	27	45	13	13	1.81
866641--866696	20	2.8	20	83	2	69	37	23	23	16	1.93
866680--866770	32	2.8	33	93	3	157	48	21	18	10	1.79
866822--866867	20	2.4	19	92	3	74	15	23	26	34	1.94
868727--868762	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
868879--868946	19	3.8	19	85	14	101	47	17	22	13	1.82
868965--869021	20	2.8	20	91	0	78	19	21	21	38	1.93
870078--870131	24	2.2	24	90	0	81	24	16	20	38	1.92
872614--872707	33	2.8	33	96	0	170	42	19	24	13	1.87
872614--872711	19	5.7	19	68	22	81	42	19	24	13	1.87
872707--872769	19	3.3	19	84	4	81	15	19	20	44	1.87
872716--872769	20	2.8	19	91	5	90	12	20	20	46	1.83
872873--872909	14	2.6	14	91	0	65	45	24	0	29	1.53
874302--874385	42	2.0	42	85	0	114	22	16	39	21	1.92
876380--876512	20	7.1	19	78	13	114	42	21	21	13	1.87
877085--877137	20	2.7	20	93	0	88	26	20	28	24	1.99
877106--877200	41	2.3	41	80	3	102	21	20	23	35	1.96
877310--877379	19	3.7	19	96	0	122	22	21	28	27	1.99
877812--877867	25	2.2	25	87	9	78	41	10	1	46	1.49
883883--883922	21	2.0	21	90	5	64	60	0	0	40	0.97
888592--888682	23	3.9	23	81	7	103	25	17	18	38	1.92
888758--888832	35	2.1	35	90	0	114	10	25	29	34	1.90

Tables:   1   2   3

The End!