genome.fa.s7928.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007928.1 Hibiscus syriacus cultivar Beakdansim tig00110334_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  336612

Tables:   1   2   

This is table  2  of  2  ( 192 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262970--263012	20	2.1	21	87	8	63	18	13	0	67	1.23
262969--263018	20	2.5	20	75	15	59	18	18	0	64	1.30
270173--270213	22	1.9	22	90	5	66	36	9	12	41	1.76
270359--270488	60	2.2	59	86	4	172	29	16	26	28	1.97
270550--270592	20	2.2	20	86	0	59	18	2	20	58	1.50
270589--270783	44	4.4	44	91	4	295	37	6	24	31	1.81
274282--274317	17	2.1	17	100	0	72	36	5	19	38	1.75
274767--274803	18	2.1	18	85	14	51	56	10	5	27	1.55
274815--274864	23	2.1	24	85	3	66	62	24	0	14	1.32
274831--274863	15	2.2	15	94	0	57	60	24	0	15	1.35
283478--283516	10	3.9	10	80	12	53	30	0	10	58	1.31
283569--283978	197	2.1	194	87	4	592	39	4	10	45	1.61
284003--284285	145	2.0	144	78	2	298	42	4	6	47	1.48
289568--289618	3	17.7	3	84	15	72	62	1	0	35	1.06
289555--289616	28	2.2	30	82	11	85	59	1	1	37	1.17
289573--289618	19	2.3	21	92	7	78	63	2	0	34	1.07
289799--290699	55	16.6	51	84	6	317	29	24	14	31	1.95
289890--290708	55	15.0	55	88	3	1134	30	25	13	30	1.94
289890--290708	219	3.7	220	89	2	1163	30	25	13	30	1.94
290693--290825	54	2.5	53	74	8	142	24	21	18	36	1.95
290914--290992	37	2.1	38	86	6	108	20	20	20	39	1.93
297836--297865	6	5.0	6	91	0	51	53	16	13	16	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298381--298412	9	3.4	9	95	4	55	65	9	3	21	1.35
299531--299563	17	1.9	17	93	0	57	48	6	0	45	1.27
303593--303631	10	3.9	10	80	12	53	30	0	10	58	1.31
303677--303766	32	2.7	33	74	6	85	41	2	10	46	1.49
303684--304063	197	1.9	196	89	2	584	38	4	11	45	1.60
303720--304064	100	3.5	98	68	16	237	39	4	11	44	1.62
304118--304400	145	2.0	144	79	2	307	42	3	6	47	1.46
309102--309285	92	2.0	92	96	0	341	25	14	15	45	1.84
309763--309809	3	16.3	3	79	16	55	61	2	0	36	1.08
310049--310215	51	3.2	51	81	8	208	26	26	16	29	1.97
310081--310215	56	2.5	56	88	5	199	28	27	14	29	1.95
310098--310688	296	2.0	296	94	0	1038	21	20	23	34	1.97
310732--310776	3	15.7	3	78	17	51	60	2	0	37	1.09
310732--310776	21	2.1	21	91	4	72	60	2	0	37	1.09
310960--311139	51	3.3	52	81	8	166	26	26	18	29	1.98
311430--311480	3	17.7	3	76	15	54	60	3	0	35	1.15
311421--311463	22	1.9	23	90	4	70	55	2	2	39	1.25
312009--312061	27	2.0	27	81	7	63	56	3	9	30	1.49
312005--312047	3	14.3	3	90	0	50	58	0	6	34	1.25
312838--312938	16	6.8	15	70	17	77	36	8	0	54	1.32
312854--312937	22	3.9	22	76	9	84	35	9	0	54	1.33
313032--313070	7	5.4	7	85	14	53	30	12	0	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313296--313333	2	19.0	2	84	10	51	44	0	2	52	1.14
313949--313987	7	5.4	7	85	14	53	30	12	0	56	1.37
314076--314120	7	6.4	7	84	0	63	22	0	33	44	1.53
314198--314246	2	25.0	2	89	4	73	46	0	4	48	1.20
314617--314668	21	2.5	21	80	0	59	23	0	26	50	1.50
314862--314923	22	2.9	21	83	4	70	25	1	30	41	1.65
314889--314927	14	2.8	14	84	11	53	17	0	30	51	1.46
315205--315249	17	2.5	18	89	7	65	28	26	0	44	1.55
315205--315255	19	2.8	18	82	11	59	27	25	0	47	1.53
315406--315468	13	4.5	13	80	11	63	38	6	7	47	1.58
315406--315553	15	10.1	14	74	17	83	43	4	5	46	1.47
315507--315542	18	1.9	19	94	5	65	47	0	5	47	1.25
315418--315553	13	10.4	13	72	13	84	44	3	5	47	1.43
315483--315580	31	3.2	31	78	20	100	44	2	3	50	1.29
315483--315580	13	7.5	13	71	20	55	44	2	3	50	1.29
316835--316875	21	2.0	20	85	4	55	58	0	0	41	0.98
319022--319224	101	2.0	101	100	0	406	39	17	13	29	1.88
331136--331169	10	3.5	10	84	8	52	88	11	0	0	0.52
331138--331165	11	2.5	11	100	0	56	92	7	0	0	0.37
333667--333735	22	3.1	23	81	10	72	47	1	0	50	1.09
333734--333797	33	2.0	32	87	9	94	45	0	6	48	1.27
333872--333932	27	2.2	28	82	8	72	49	1	1	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333878--334003	9	14.2	9	68	18	50	49	1	1	47	1.20
334048--334106	10	5.9	10	75	9	50	47	0	0	52	1.00
334022--334115	28	3.3	26	77	15	82	46	0	1	52	1.07
334066--334119	20	2.4	21	82	17	65	44	0	0	55	0.99
335435--335583	79	1.9	78	84	4	201	51	10	11	27	1.70
335717--335749	3	11.0	3	100	0	66	66	0	0	33	0.92

Tables:   1   2

The End!