genome.fa.s7933.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007933.1 Hibiscus syriacus cultivar Beakdansim tig00110343_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  282743

Tables:   1   2   

This is table  2  of  2  ( 175 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217427--217479	28	2.0	27	89	10	83	75	3	16	3	1.10
219139--219213	37	2.0	38	86	2	107	29	21	14	34	1.93
219320--219545	36	6.4	36	77	10	225	27	19	12	39	1.89
219139--219507	100	3.6	102	88	2	485	29	20	13	37	1.90
219340--219599	138	1.9	138	87	1	387	27	20	12	39	1.89
219503--219657	65	2.3	67	85	3	197	32	21	7	37	1.82
219540--219686	67	2.2	68	82	6	181	35	21	6	36	1.80
220446--220513	29	2.3	29	82	2	82	27	23	13	35	1.92
221349--221384	2	18.0	2	100	0	72	50	0	0	50	1.00
223119--223419	24	12.8	24	80	3	292	19	47	9	23	1.78
223133--223460	162	2.0	162	85	0	440	20	48	8	22	1.75
223119--223363	90	2.7	89	84	6	240	19	48	9	22	1.77
231469--231518	25	2.0	25	100	0	100	64	8	12	16	1.49
235499--235542	19	2.2	20	88	4	63	54	4	4	36	1.41
235640--235674	12	2.8	13	86	8	54	40	5	8	45	1.58
237464--237507	20	2.2	20	84	4	54	68	18	0	13	1.22
241612--241651	20	2.0	21	85	5	55	25	17	10	47	1.78
241730--241876	74	2.0	74	95	0	267	24	9	14	51	1.73
246943--247012	6	11.7	6	70	11	54	74	4	4	17	1.14
246942--246990	19	2.6	19	83	3	64	71	8	2	18	1.21
249890--249925	14	2.5	14	90	4	54	63	0	11	25	1.27
251441--251479	18	2.1	19	86	13	55	23	20	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251693--251730	19	2.0	20	89	5	60	55	2	2	39	1.28
253074--253339	24	11.3	24	79	4	249	22	9	48	19	1.76
253119--253349	48	4.9	48	84	6	312	22	9	48	19	1.78
253046--253325	138	2.0	139	78	6	316	22	8	48	20	1.75
253118--253349	90	2.5	93	86	6	328	22	9	48	19	1.78
253377--253437	30	2.0	30	81	6	70	24	3	45	26	1.68
255938--256003	29	2.2	29	86	2	87	37	13	22	25	1.91
257338--257381	22	2.0	21	86	4	61	38	13	0	47	1.43
257815--257848	17	2.0	17	94	0	59	55	0	0	44	0.99
267495--267550	25	2.3	25	81	9	62	67	10	16	5	1.37
267512--267559	25	1.9	25	87	8	71	70	8	18	2	1.22
267511--267572	15	4.1	15	78	13	65	72	8	17	1	1.17
269371--269755	106	3.6	106	77	7	449	31	15	11	41	1.82
269355--269769	213	1.9	213	97	0	776	31	15	11	41	1.83
269731--269832	36	2.8	36	82	5	127	34	17	11	36	1.87
269954--270145	64	2.9	66	81	6	205	33	9	14	43	1.77
270149--270222	33	2.3	32	82	8	89	35	20	9	35	1.85
270144--270309	29	5.6	29	80	7	145	29	16	12	41	1.85
270336--270393	26	2.2	27	90	3	91	31	8	13	46	1.74
270249--270473	88	2.5	91	86	5	296	27	12	14	45	1.81
270566--270672	29	3.5	29	74	17	90	25	14	15	44	1.84
270731--270931	43	4.5	42	66	19	104	24	32	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270826--270901	40	1.9	40	86	0	107	19	36	19	23	1.95
270688--271041	134	2.6	133	90	2	521	24	31	18	25	1.97
270963--271078	43	2.8	40	71	7	108	25	31	17	25	1.97
271228--271273	3	15.0	3	82	13	58	36	0	0	63	0.95
271230--271273	16	2.8	16	89	3	72	38	0	0	61	0.96
271229--271279	25	2.0	25	85	14	70	37	1	0	60	1.08
276118--276312	42	4.6	42	75	5	178	31	18	21	28	1.97
276074--276312	84	2.9	83	83	5	302	30	18	20	30	1.96
278750--278837	42	2.1	42	89	8	135	27	18	12	42	1.86
278809--278916	43	2.5	42	82	4	117	27	24	14	33	1.94
279951--279975	12	2.1	12	100	0	50	28	24	8	40	1.83

Tables:   1   2

The End!