genome.fa.s7934.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007934.1 Hibiscus syriacus cultivar Beakdansim tig00110344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  290973

Tables:   1   2   

This is table  2  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184554--184606	24	2.2	24	93	0	88	9	37	7	45	1.65
187032--187066	14	2.4	15	90	4	54	68	0	0	31	0.90
187222--187263	2	21.5	2	95	4	77	50	0	0	50	1.00
201466--201507	21	2.0	21	95	0	75	26	28	21	23	1.99
201629--201690	29	2.0	31	87	9	92	45	12	6	35	1.68
204193--204234	21	2.0	21	95	0	75	26	28	21	23	1.99
204340--204407	19	3.5	19	89	2	91	36	13	11	38	1.81
204461--204521	29	2.0	31	87	9	90	44	13	6	36	1.69
210362--210392	2	16.0	2	93	6	55	51	0	0	48	1.00
210362--210390	15	1.9	15	100	0	58	51	0	0	48	1.00
220246--220284	19	2.0	21	90	10	64	58	10	7	23	1.56
221533--221671	52	2.7	51	86	4	179	27	24	23	24	2.00
224362--224404	15	2.8	15	89	10	61	58	2	4	34	1.32
226653--226752	50	2.0	50	90	3	157	33	17	13	37	1.88
236906--238932	4	508.8	4	98	0	3107	49	29	0	20	1.49
237003--237027	2	12.5	2	100	0	50	52	48	0	0	1.00
237931--238307	2	188.5	2	99	0	745	50	49	0	0	1.02
239326--239380	22	2.5	22	77	8	67	43	1	1	52	1.22
252879--252931	18	2.9	18	80	0	70	15	43	22	18	1.87
253003--253048	23	2.0	24	91	4	76	30	6	13	50	1.66
253068--253125	29	2.0	30	82	3	73	34	5	13	46	1.66
263049--263091	21	2.0	21	81	0	50	30	25	25	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263118--263155	20	1.9	20	88	0	58	23	34	31	10	1.89
264849--264925	31	2.5	31	84	0	100	20	18	19	41	1.90
267472--267504	16	2.1	16	100	0	66	42	6	18	33	1.75
270166--270242	31	2.5	31	95	0	136	19	20	20	38	1.93
270166--270257	31	3.0	31	90	3	105	21	19	21	36	1.95
272988--273089	3	34.0	3	83	0	132	33	2	0	63	1.09
273521--273545	1	25.0	1	100	0	50	100	0	0	0	0.00
285837--285894	24	2.6	23	84	15	77	79	0	17	3	0.87
286821--287274	52	8.8	52	95	2	765	23	14	22	38	1.92
287912--288572	113	5.8	113	93	2	1105	37	14	20	27	1.91
287912--288572	225	2.9	225	95	2	1175	37	14	20	27	1.91
288817--288916	3	34.0	3	82	4	123	34	3	0	63	1.10
289956--290010	28	1.9	29	82	10	69	29	5	7	58	1.48
290294--290338	22	2.2	20	84	8	54	37	2	4	55	1.32

Tables:   1   2

The End!