genome.fa.s7934.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007934.1 Hibiscus syriacus cultivar Beakdansim tig00110344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  290973

Tables:   1   2   

This is table  1  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670--714	23	2.0	22	83	12	56	60	8	2	28	1.39
3613--3653	8	5.2	8	82	5	57	34	0	29	36	1.58
3724--3965	128	1.9	125	95	2	439	23	25	19	32	1.98
4220--4246	14	1.9	14	100	0	54	44	3	0	51	1.19
4366--4466	34	3.0	34	85	0	139	38	2	3	54	1.34
4989--5058	21	3.3	20	90	5	95	21	25	34	18	1.96
4986--5071	21	4.1	21	85	8	68	26	23	31	18	1.97
5062--5109	21	2.3	21	85	0	60	22	12	39	25	1.89
6831--6905	31	2.4	33	77	11	84	60	1	0	38	1.06
6828--6907	34	2.5	31	83	8	97	61	1	0	37	1.04
6861--6936	33	2.3	34	80	14	88	64	5	0	30	1.15
7658--7691	12	2.8	12	86	0	50	70	0	2	26	1.01
7657--7715	23	2.7	22	80	12	68	71	1	3	23	1.11
13395--13565	88	1.9	88	93	0	297	37	9	9	43	1.69
13623--13678	24	2.4	24	76	8	62	33	3	1	60	1.24
14058--14153	21	4.6	21	88	3	122	31	26	20	21	1.98
14058--14179	42	2.9	42	82	8	126	31	23	21	22	1.98
14162--14323	21	8.6	20	68	28	99	24	22	22	31	1.98
14203--14289	20	4.7	20	68	25	73	22	21	19	35	1.96
14227--14308	13	6.2	13	71	18	62	24	23	20	31	1.98
14186--14326	54	2.6	54	100	0	282	24	21	20	33	1.97
14441--14483	6	7.5	6	89	2	54	32	51	13	2	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15139--15273	41	3.3	40	73	19	125	31	20	20	27	1.97
15139--15298	82	2.0	82	92	2	268	30	20	19	29	1.97
15159--15274	21	5.6	21	70	17	73	30	22	19	27	1.98
15174--15342	41	4.1	40	78	13	173	27	21	20	29	1.98
15282--15356	21	3.6	21	96	0	132	21	22	26	29	1.99
18205--18256	15	3.5	15	70	19	54	26	1	1	69	1.10
18185--18256	30	2.2	31	83	14	92	29	2	2	65	1.21
32597--32629	2	16.5	2	100	0	66	48	0	0	51	1.00
33356--33381	6	4.3	6	100	0	52	15	19	30	34	1.93
45027--45066	18	2.2	18	90	0	62	50	5	0	45	1.23
45074--45201	30	4.4	28	82	11	161	37	6	0	55	1.31
45074--45201	57	2.2	59	86	8	174	37	6	0	55	1.31
49696--49779	38	2.2	38	87	2	125	38	39	10	11	1.77
49401--49986	259	2.3	244	88	7	895	36	26	11	25	1.90
54722--54768	22	2.1	21	84	7	58	40	0	6	53	1.27
57659--57837	56	3.2	55	77	12	186	33	15	9	41	1.79
62733--62791	31	1.9	31	92	0	100	40	6	10	42	1.65
63418--63479	18	3.2	20	78	19	62	61	0	1	37	1.06
66697--66745	20	2.7	18	81	12	57	51	0	2	46	1.12
66696--66740	19	2.4	19	88	7	65	51	0	2	46	1.13
66743--66826	30	2.8	29	79	12	82	55	0	4	39	1.21
66832--66894	32	1.9	32	87	3	90	52	3	3	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67036--67105	30	2.3	30	85	0	104	45	12	10	31	1.75
70911--70953	7	6.4	7	78	10	54	25	27	30	16	1.97
70931--70958	12	2.3	12	100	0	56	14	25	42	17	1.87
70969--71019	9	5.3	9	81	11	57	27	27	29	15	1.96
71002--71040	21	1.9	21	89	5	62	33	17	25	23	1.96
79452--79490	21	1.9	20	89	5	60	20	2	5	71	1.17
81017--81187	89	1.9	89	91	2	281	28	18	23	29	1.97
81202--81232	16	1.9	16	100	0	62	45	12	6	35	1.68
81739--81763	8	3.1	8	100	0	50	88	0	0	12	0.53
82388--82427	2	20.0	2	100	0	80	50	0	0	50	1.00
82491--82546	25	2.2	26	80	3	60	46	1	7	44	1.41
94878--94931	28	1.9	28	100	0	108	33	7	16	42	1.76
98840--98914	3	26.0	3	81	8	75	58	1	0	40	1.06
99291--99353	20	3.3	20	67	24	64	17	23	7	50	1.72
99276--99466	40	4.8	40	92	7	304	18	23	10	47	1.79
99409--99832	112	3.8	113	93	4	733	26	19	15	39	1.91
99409--99831	223	1.9	219	94	2	749	26	19	15	39	1.91
100221--100283	31	2.0	31	87	6	92	42	1	1	53	1.19
100982--101029	17	2.8	17	77	3	51	56	2	0	41	1.11
104708--104790	40	2.0	42	83	4	107	50	2	2	44	1.28
105576--105604	15	1.9	15	100	0	58	17	55	6	20	1.65
105993--106041	14	3.8	13	78	7	55	53	14	18	14	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107555--107760	20	10.4	19	78	12	132	40	22	15	21	1.91
107578--107760	40	4.6	40	73	14	162	39	22	15	21	1.92
107554--107757	60	3.4	59	78	12	231	40	22	15	21	1.90
107999--108036	16	2.5	15	84	12	51	28	5	0	65	1.14
108631--108664	12	2.8	12	90	0	50	55	29	0	14	1.40
108791--108844	24	2.2	24	86	0	72	22	16	18	42	1.89
111108--111142	6	5.8	6	86	0	52	60	20	2	17	1.49
111109--111149	18	2.3	18	95	0	73	56	24	2	17	1.53
111592--111628	14	2.6	14	91	0	65	45	21	0	32	1.52
113082--113143	21	3.0	21	80	0	70	25	19	33	20	1.96
115209--115252	20	2.2	20	83	0	52	13	18	18	50	1.79
115583--115633	22	2.3	22	86	0	75	21	13	43	21	1.87
115744--115781	20	2.0	20	84	5	51	44	13	15	26	1.83
115827--115889	20	3.2	20	100	0	126	19	19	25	36	1.94
115806--115938	40	3.3	41	78	13	125	21	15	27	36	1.93
116800--116836	17	2.2	16	90	4	56	40	8	0	51	1.32
116926--117265	168	2.0	170	98	1	666	37	9	18	34	1.83
119824--119900	9	8.0	9	75	13	55	19	25	23	31	1.98
119853--119904	19	2.8	18	80	11	68	15	26	28	28	1.96
119824--119905	29	2.8	30	80	9	98	20	26	23	29	1.99
119908--119976	17	4.1	17	94	0	120	18	46	21	13	1.83
120417--120561	71	2.0	72	98	1	283	29	16	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127193--127253	10	6.4	9	78	10	59	18	27	27	26	1.98
127193--127237	19	2.4	19	85	7	56	15	26	26	31	1.96
127201--127263	29	2.2	30	80	13	78	20	28	26	23	1.99
127265--127308	22	2.0	21	95	4	79	18	50	22	9	1.75
129843--129869	3	9.0	3	100	0	54	66	0	0	33	0.92
133211--133332	31	4.0	31	82	4	158	19	18	24	37	1.94
133507--133608	31	3.3	31	78	6	125	30	14	19	35	1.92
134282--134324	22	2.0	22	86	4	61	30	16	27	25	1.97
137580--137653	32	2.3	34	81	13	93	47	2	4	45	1.35
137619--137694	27	2.9	26	76	7	82	46	0	5	48	1.24
146622--146680	5	10.8	6	94	5	76	32	49	18	0	1.48
146626--146708	5	16.0	5	94	1	67	34	39	25	0	1.56
146681--146716	5	7.4	5	96	3	65	36	22	41	0	1.54
147315--147378	21	3.1	21	72	4	67	39	26	17	17	1.91
147385--147430	19	2.4	19	85	3	56	21	15	32	30	1.94
147396--147432	19	1.9	19	94	0	65	21	16	29	32	1.95
152222--152279	23	2.5	23	94	0	98	31	8	18	41	1.81
154834--154911	13	5.5	13	71	20	59	32	17	5	44	1.71
154845--154898	17	3.5	17	71	23	64	29	18	7	44	1.77
154825--154912	29	3.0	29	96	3	160	32	17	6	43	1.75
157242--157300	20	2.9	20	77	5	64	42	11	23	22	1.86
157659--157715	20	2.7	21	83	5	71	43	12	19	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160984--161026	22	2.0	22	86	9	61	37	23	18	20	1.94
163071--163102	16	2.0	16	100	0	64	43	25	12	18	1.85
164603--164652	24	2.1	24	85	7	66	22	2	16	60	1.46
169843--169979	70	2.0	68	97	2	256	17	19	21	40	1.91
171605--171653	11	4.2	11	79	10	53	8	24	0	67	1.18
171574--171643	23	3.2	23	80	13	94	12	17	0	70	1.18
172379--172419	20	2.0	20	100	0	82	39	4	36	19	1.73
174823--174871	24	2.0	24	84	7	64	22	2	16	59	1.47
178610--178653	16	2.8	16	96	0	79	18	15	25	40	1.90
182759--183273	255	2.0	257	96	3	959	28	14	17	38	1.90

Tables:   1   2