Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007940.1 Hibiscus syriacus cultivar Beakdansim tig00110356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1348078

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 521 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1221984--1222040
17
3.4
17
77
0
60
56
3
14
26
1.54
1234892--1234947
2
28.0
2
100
0
112
50
0
0
50
1.00
1242612--1242764
20
7.7
20
74
12
109
37
27
15
19
1.91
1242612--1242763
60
2.5
59
75
12
139
38
27
14
19
1.91
1242758--1242805
21
2.3
21
82
3
62
45
16
20
16
1.85
1243177--1243225
20
2.5
20
96
0
89
20
22
14
42
1.88
1245521--1245596
30
2.6
28
72
8
71
46
1
9
43
1.44
1245714--1245768
23
2.3
23
84
3
74
43
3
7
45
1.49
1250029--1250059
4
7.8
4
92
0
53
51
19
0
29
1.47
1250026--1250061
16
2.2
16
100
0
72
50
16
0
33
1.46
1253580--1253619
4
10.0
4
100
0
80
75
0
25
0
0.81
1254280--1254318
2
20.0
2
94
5
71
48
0
0
51
1.00
1254334--1254411
31
2.5
31
76
13
88
44
8
6
39
1.61
1261428--1261458
4
7.8
4
100
0
62
25
0
25
48
1.52
1269212--1269249
20
1.9
20
88
0
58
26
26
5
42
1.76
1269613--1269668
28
2.0
28
96
0
103
41
17
5
35
1.73
1270128--1270157
15
2.0
15
100
0
60
13
33
13
40
1.83
1272517--1272543
2
13.5
2
100
0
54
48
0
0
51
1.00
1272683--1272709
2
13.5
2
100
0
54
48
0
0
51
1.00
1272487--1272817
166
2.0
166
98
1
648
39
10
5
44
1.62
1276045--1276097
16
3.4
16
82
10
65
67
0
0
32
0.91
1276037--1276092
26
2.1
27
83
9
71
71
0
0
28
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1277080--1277119
14
2.9
14
88
0
53
37
15
20
27
1.92
1282159--1282435
36
7.7
36
97
0
491
30
24
27
17
1.97
1282694--1282727
17
2.0
17
94
0
59
44
5
14
35
1.70
1282905--1283048
36
3.8
36
73
18
137
18
24
20
37
1.94
1290421--1290522
39
2.6
40
82
3
134
43
7
14
34
1.75
1298448--1298498
22
2.4
20
81
12
57
56
1
1
39
1.22
1298485--1298544
20
2.9
20
85
5
75
50
1
0
48
1.11
1304276--1304301
8
3.2
8
100
0
52
11
0
0
88
0.52
1305248--1305292
21
2.1
21
83
0
54
33
6
6
53
1.53
1310018--1310060
20
2.1
21
86
4
61
55
0
2
41
1.12
1310732--1310778
21
2.3
20
85
3
67
44
0
0
55
0.99
1317016--1317064
25
2.0
25
87
0
71
42
4
2
51
1.32
1319027--1319091
28
2.4
28
94
2
114
32
4
0
63
1.15
1325955--1325998
23
1.9
23
90
0
70
18
20
20
40
1.91
1328676--1328714
2
19.5
2
100
0
78
48
0
0
51
1.00
1337589--1337613
2
12.5
2
100
0
50
52
0
0
48
1.00
1344281--1344364
36
2.3
36
93
0
141
21
23
29
25
1.99
1345640--1345683
14
2.9
16
76
13
56
50
6
6
36
1.56
1346797--1346860
23
2.9
21
75
22
60
34
3
0
62
1.11

Tables:   1   2   3   4   5

The End!