genome.fa.s7948.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007948.1 Hibiscus syriacus cultivar Beakdansim tig00110370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  294181

Tables:   1   2   

This is table  1  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1871--1936	33	2.0	33	87	0	96	28	1	45	24	1.62
2117--2152	15	2.5	14	86	8	54	58	0	38	2	1.13
3714--3748	18	1.9	18	94	0	61	34	2	11	51	1.53
3834--4632	198	4.1	198	96	1	1466	37	14	15	32	1.88
4941--5008	21	3.4	18	69	21	55	36	8	35	19	1.83
4941--5036	6	15.3	6	74	8	57	36	7	35	20	1.81
4956--5040	3	28.0	3	74	2	71	35	5	35	23	1.79
6489--7140	182	3.6	183	95	1	1181	34	15	15	34	1.89
9696--9755	23	2.6	23	89	0	84	36	6	18	38	1.77
9770--9808	20	2.0	20	89	0	60	25	15	10	48	1.76
10120--10184	23	2.8	23	90	0	94	35	7	18	38	1.80
10388--10424	18	2.1	18	89	0	56	32	5	10	51	1.60
14719--14757	2	19.5	2	94	0	69	53	0	0	46	1.00
14810--14845	18	2.1	18	89	5	56	66	2	5	25	1.27
16069--16577	106	4.8	106	88	3	740	22	18	24	34	1.96
16426--16742	162	2.0	159	86	5	438	25	18	22	33	1.96
17631--17706	36	2.1	37	92	7	129	36	15	23	23	1.94
18195--18230	18	2.0	18	94	0	63	41	33	8	16	1.78
19289--19346	19	3.1	19	76	14	75	0	13	6	79	0.93
19266--19345	37	2.2	36	80	10	90	1	17	7	73	1.12
19301--19352	16	3.3	15	82	12	61	0	13	7	78	0.94
19301--19339	11	3.7	10	83	10	51	0	12	7	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19299--19346	21	2.2	22	88	7	71	0	12	6	81	0.87
22789--22826	15	2.5	15	91	0	67	84	0	0	15	0.63
22788--22826	12	3.4	11	83	13	51	82	0	0	17	0.68
23927--23966	18	2.3	18	83	8	57	25	5	2	67	1.23
24025--24051	2	13.5	2	100	0	54	48	0	0	51	1.00
23970--24094	55	2.3	57	81	10	136	36	4	1	57	1.29
24157--24308	2	78.0	2	80	10	154	42	2	1	53	1.23
26928--27047	60	2.0	61	85	4	163	27	20	23	28	1.99
35647--35678	6	5.3	6	96	0	55	0	43	0	56	0.99
50223--50261	15	2.6	15	83	0	51	20	2	48	28	1.62
57825--57855	10	3.0	10	95	4	53	29	48	0	22	1.51
60710--60737	2	14.0	2	100	0	56	50	0	0	50	1.00
62123--62151	15	1.9	15	100	0	58	20	20	37	20	1.94
62395--62441	3	15.7	3	82	8	60	36	0	0	63	0.94
64193--64231	18	2.3	18	86	8	55	12	23	20	43	1.86
78597--78701	47	2.2	47	93	0	174	22	15	24	37	1.93
79701--79764	33	2.0	33	96	3	121	31	37	6	25	1.81
96036--96069	17	2.0	17	88	11	52	14	2	35	47	1.60
115143--115198	15	3.7	15	80	4	60	33	1	30	33	1.68
129809--129872	31	2.1	31	100	0	128	29	6	12	51	1.64
151651--151729	31	2.5	32	87	2	115	39	10	25	25	1.87
155599--155670	3	24.0	3	100	0	144	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155758--155889	35	3.8	35	78	7	135	21	19	19	39	1.93
155823--155896	34	2.2	31	80	13	85	18	20	17	43	1.88
155758--155900	70	2.0	71	84	6	184	19	20	18	41	1.91
165735--165860	60	2.1	60	85	2	164	32	17	7	42	1.76
168093--168156	21	3.4	20	66	29	59	31	4	18	45	1.70
168086--168203	35	3.3	36	90	5	186	33	4	17	44	1.68
168615--168646	16	2.0	16	93	0	55	40	6	18	34	1.76
172717--172777	21	3.2	21	63	29	55	32	3	19	44	1.67
172709--172830	35	3.4	36	84	6	158	33	4	18	43	1.69
175693--175719	2	13.5	2	100	0	54	51	48	0	0	1.00
175719--175764	2	23.0	2	100	0	92	50	0	0	50	1.00
176438--176473	18	2.0	18	94	0	63	27	2	5	63	1.30
178076--178120	9	5.0	9	83	0	54	80	2	2	15	0.92
178058--178129	18	3.7	19	81	12	76	76	4	2	16	1.06
178075--178127	27	2.0	26	85	3	70	77	1	1	18	0.96
178162--178210	18	2.8	17	82	11	64	77	0	10	12	0.99
178183--178207	11	2.3	11	100	0	50	84	0	8	8	0.79
178237--178329	37	2.5	36	80	7	87	68	5	6	19	1.31
178313--178350	18	2.1	18	85	9	51	76	0	5	18	0.97
178314--178402	49	1.9	43	82	13	106	69	1	5	23	1.16
178381--178440	17	3.2	17	70	20	57	63	1	5	30	1.25
178497--178534	20	1.9	20	89	10	60	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178525--178563	20	2.0	20	85	10	53	69	0	7	23	1.14
181953--181980	14	2.0	14	100	0	56	57	0	7	35	1.26
182962--183355	198	2.0	199	97	0	745	28	14	18	39	1.89
185329--185364	2	18.0	2	100	0	72	50	0	0	50	1.00
185850--185902	21	2.5	21	84	0	70	20	26	18	33	1.96
185892--185985	20	4.7	20	86	2	143	38	20	21	20	1.94
185892--185985	41	2.3	40	89	3	143	38	20	21	20	1.94
186516--186587	20	3.6	19	75	7	63	51	15	16	16	1.77
186614--186769	20	8.9	18	68	21	84	12	23	19	44	1.84
186636--186724	14	5.6	14	69	23	61	11	23	21	43	1.84
186619--186745	33	3.8	33	92	1	209	11	22	21	44	1.85
188544--188617	36	2.1	36	97	0	139	25	18	16	39	1.91
188455--188711	130	2.0	125	90	5	408	22	13	17	45	1.83
188580--188864	94	3.0	94	94	1	493	21	11	18	48	1.80
189016--189122	19	5.8	19	73	12	98	12	21	20	45	1.83
190993--191028	14	2.6	14	95	0	63	33	0	22	44	1.53
191135--191225	19	5.4	18	67	28	58	47	23	19	9	1.79
191135--191232	32	3.0	33	88	7	139	47	23	19	9	1.77
191167--191237	19	4.1	19	74	23	75	50	25	15	8	1.72
191242--191315	33	2.3	33	92	2	123	12	21	20	45	1.83
193605--193631	14	1.9	14	100	0	54	7	11	29	51	1.64
193843--193889	24	2.0	24	95	0	85	34	17	21	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193847--193898	24	2.2	24	85	0	68	36	19	19	25	1.95
194747--194833	20	4.3	21	86	5	126	20	21	18	39	1.93
194747--194833	41	2.2	40	95	2	156	20	21	18	39	1.93
194762--194848	41	2.1	41	84	0	111	25	20	19	34	1.96
194830--194875	21	2.2	21	88	0	65	36	17	28	17	1.92
197409--197566	21	7.8	20	71	9	88	38	25	16	19	1.92
197469--197585	20	5.7	20	75	12	78	38	23	17	20	1.93
197553--197762	20	10.5	20	83	5	219	36	25	18	20	1.94
198443--198489	24	2.0	24	87	8	69	25	14	21	38	1.92
198664--198688	12	2.1	12	100	0	50	72	0	28	0	0.86
200971--201201	33	6.7	34	75	14	197	46	18	21	13	1.83
200985--201201	19	12.4	19	76	19	240	47	17	21	13	1.83
200985--201201	71	3.1	71	79	12	227	47	17	21	13	1.83
201071--201223	33	4.5	33	74	16	150	46	17	22	13	1.83
201013--201223	52	4.0	52	98	0	404	46	17	22	13	1.83
201248--201326	19	4.4	19	80	16	105	13	22	17	45	1.84
201433--201469	14	2.6	14	91	0	65	45	21	0	32	1.52
203447--203503	14	3.7	14	77	20	60	45	22	21	10	1.82
203428--203520	33	2.8	33	95	0	168	47	21	20	10	1.80
203391--203525	19	7.6	19	76	16	128	45	23	19	11	1.82
203521--203649	19	7.3	19	75	17	125	8	17	28	45	1.77
203537--203593	14	3.7	14	75	20	60	7	19	29	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203521--203612	33	2.8	33	96	0	166	7	18	28	45	1.76
203697--204071	93	4.1	93	97	1	709	45	19	12	22	1.83
205789--205872	19	4.7	19	81	14	97	44	21	22	11	1.85
205767--205872	52	2.0	52	92	0	176	46	19	22	11	1.82
205891--205960	20	3.0	25	72	23	87	12	24	14	48	1.78
205912--205974	20	3.0	21	79	4	83	12	25	15	46	1.82
206052--206122	33	2.2	33	92	0	115	47	18	22	11	1.80
206304--206358	22	2.5	22	81	0	74	20	16	40	23	1.91
206505--206678	20	8.6	20	83	5	217	19	19	26	34	1.96
206505--206678	60	2.9	60	85	0	249	19	19	26	34	1.96

Tables:   1   2